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使用计算机模拟方法对多靶点胰岛素模拟抗糖尿病肽进行表征。

Characterization of multi-targeted insulin-mimetic antidiabetic peptides using in silico approaches.

作者信息

Bilal Anas, Mustafa Ghulam

机构信息

Department of Biochemistry, Government College University Faisalabad, Faisalabad, Pakistan.

出版信息

PLoS One. 2025 Aug 19;20(8):e0330341. doi: 10.1371/journal.pone.0330341. eCollection 2025.

Abstract

Diabetes is a metabolic disease that can affect people at any age. Despite being one of the leading causes of death, the treatment of diabetes is extremely difficult. For the treatment of diabetes mellitus various synthetic oral hypoglycemic drugs and insulin is available. However, insulin cannot be taken orally and the synthetic agents used can have harmful side effects. Bioactive peptides are particular protein fragments that have a beneficial impact on human health and physiological processes. These peptides can be applied as antidiabetic agents in the treatment of diabetes. The aim of the current study was to develop hypoglycemic peptides (HGPs) from plant sources and to investigate their binding interactions with selected diabetic protein receptors using peptide-protein docking, in order to identify potential peptide candidates for the treatment of diabetes mellitus. The binding patterns of top seven hypoglycemic peptides with ten selected receptor proteins were explored using peptide-protein docking. The peptides P2 and P6 showed best haddock scores and binding pattern against target receptors. The P2 showed strong interactions with maltase-glucoamylase (binding energy of -108.7 + /- 9.3 kcal/mol and with six hydrogen bonds), glucose transporter 1 (GLUT1) (binding energy of -85.3 + /- 1.4 kcal/mol and with three hydrogen bonds). Peptide 6 exhibited highest score against insulin-like growth factor 1 receptor (binding energy of -107.5 + /- 5.4 kcal/mol and with seven hydrogen bonds) and pancreatic alpha-amylase (binding energy of -121.3 + /- 3.1 kcal/mol and with seven hydrogen bonds), while against Jun N-terminal kinase1 receptor peptide, the peptides P5 and P6 showed same haddock energy of -92.1 + /- 4.1 kcal/mol having different number of hydrogen bond interactions in both complexes. The molecular dynamics simulation revealed that P6 and P2 were firmly bound to insulin-like growth factor 1 receptor and maltase-glucoamylase, respectively for the simulation time of 100 ns. The findings of this computational study support the data showing that these hypoglycemic peptides are effective against selected diabetic proteins. The insulin-mimetic antidiabetic peptides would be integrated into active packaging systems for the development of multi-functional materials to regulate glucose absorption. However, further assessment and validation of the particular peptides as potential therapeutic candidates for diabetes mellitus are required.

摘要

糖尿病是一种可影响任何年龄段人群的代谢性疾病。尽管它是主要死因之一,但糖尿病的治疗极其困难。治疗糖尿病有多种合成口服降糖药和胰岛素可供使用。然而,胰岛素不能口服,且所使用的合成药物可能有有害副作用。生物活性肽是对人体健康和生理过程有有益影响的特定蛋白质片段。这些肽可作为抗糖尿病药物用于糖尿病治疗。本研究的目的是从植物来源开发降血糖肽(HGPs),并使用肽 - 蛋白质对接研究它们与选定的糖尿病蛋白受体的结合相互作用,以确定治疗糖尿病的潜在肽候选物。使用肽 - 蛋白质对接探索了七种降血糖肽与十种选定受体蛋白的结合模式。肽P2和P6对靶受体显示出最佳的哈克得分和结合模式。P2与麦芽糖酶 - 葡糖淀粉酶有强烈相互作用(结合能为 -108.7 ± 9.3千卡/摩尔,有六个氢键),与葡萄糖转运蛋白1(GLUT1)(结合能为 -85.3 ± 1.4千卡/摩尔,有三个氢键)。肽6对胰岛素样生长因子1受体显示出最高得分(结合能为 -107.5 ± 5.4千卡/摩尔,有七个氢键)和胰腺α - 淀粉酶(结合能为 -121.3 ± 3.1千卡/摩尔,有七个氢键),而对于Jun N末端激酶1受体肽,肽P5和P6显示出相同的哈克能量 -92.1 ± 4.1千卡/摩尔,在两种复合物中有不同数量的氢键相互作用。分子动力学模拟表明,在100纳秒的模拟时间内,P6和P2分别与胰岛素样生长因子1受体和麦芽糖酶 - 葡糖淀粉酶牢固结合。这项计算研究的结果支持了这些降血糖肽对选定糖尿病蛋白有效的数据。模拟胰岛素的抗糖尿病肽将被整合到活性包装系统中,用于开发调节葡萄糖吸收的多功能材料。然而,需要对这些特定肽作为糖尿病潜在治疗候选物进行进一步评估和验证。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/28fc/12364323/62f9abe3edad/pone.0330341.g001.jpg

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