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AMTDB:用于抗肿瘤药物发现的自噬调节剂综合数据库。

AMTDB: A comprehensive database of autophagic modulators for anti-tumor drug discovery.

作者信息

Fu Jiahui, Wu Lifeng, Hu Gaoyong, Shi Qiqi, Wang Ruodi, Zhu Lingjuan, Yu Haiyang, Fu Leilei

机构信息

School of Traditional Chinese Materia Medica, Key Laboratory of Structure-Based Drug Design and Discovery, Ministry of Education, Shenyang Pharmaceutical University, Shenyang, China.

Sichuan Engineering Research Center for Biomimetic Synthesis of Natural Drugs, School of Life Science and Engineering, Southwest Jiaotong University, Chengdu, China.

出版信息

Front Pharmacol. 2022 Aug 9;13:956501. doi: 10.3389/fphar.2022.956501. eCollection 2022.

DOI:10.3389/fphar.2022.956501
PMID:36016573
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9395961/
Abstract

Autophagy, originally described as a mechanism for intracellular waste disposal and recovery, has been becoming a crucial biological process closely related to many types of human tumors, including breast cancer, osteosarcoma, glioma, etc., suggesting that intervention of autophagy is a promising therapeutic strategy for cancer drug development. Therefore, a high-quality database is crucial for unraveling the complicated relationship between autophagy and human cancers, elucidating the crosstalk between the key autophagic pathways, and autophagic modulators with their remarkable antitumor activities. To achieve this goal, a comprehensive database of autophagic modulators (AMTDB) was developed. AMTDB focuses on 153 cancer types, 1,153 autophagic regulators, 860 targets, and 2,046 mechanisms/signaling pathways. In addition, a variety of classification methods, advanced retrieval, and target prediction functions are provided exclusively to cater to the different demands of users. Collectively, AMTDB is expected to serve as a powerful online resource to provide a new clue for the discovery of more candidate cancer drugs.

摘要

自噬最初被描述为一种细胞内废物处理和回收的机制,如今已成为与多种人类肿瘤密切相关的关键生物学过程,包括乳腺癌、骨肉瘤、神经胶质瘤等,这表明自噬干预是癌症药物开发中一种有前景的治疗策略。因此,一个高质量的数据库对于阐明自噬与人类癌症之间的复杂关系、阐明关键自噬途径之间的相互作用以及具有显著抗肿瘤活性的自噬调节剂至关重要。为实现这一目标,开发了一个自噬调节剂综合数据库(AMTDB)。AMTDB专注于153种癌症类型、1153种自噬调节因子、860个靶点以及2046种机制/信号通路。此外,还专门提供了多种分类方法、高级检索和靶点预测功能,以满足用户的不同需求。总体而言,AMTDB有望成为一个强大的在线资源,为发现更多候选癌症药物提供新线索。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/61dc/9395961/1d4850fd8c2d/fphar-13-956501-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/61dc/9395961/1bb8c030a700/fphar-13-956501-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/61dc/9395961/9ace36b9e2a1/fphar-13-956501-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/61dc/9395961/ccf04360e6ac/fphar-13-956501-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/61dc/9395961/1d4850fd8c2d/fphar-13-956501-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/61dc/9395961/1bb8c030a700/fphar-13-956501-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/61dc/9395961/9ace36b9e2a1/fphar-13-956501-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/61dc/9395961/ccf04360e6ac/fphar-13-956501-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/61dc/9395961/1d4850fd8c2d/fphar-13-956501-g004.jpg

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本文引用的文献

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J Med Chem. 2022 Apr 28;65(8):5870-5885. doi: 10.1021/acs.jmedchem.1c02053. Epub 2022 Apr 7.
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Designing strategies of small-molecule compounds for modulating non-coding RNAs in cancer therapy.设计小分子化合物策略以调节癌症治疗中的非编码 RNA。
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Metformin promotes histone deacetylation of optineurin and suppresses tumour growth through autophagy inhibition in ocular melanoma.
二甲双胍通过抑制自噬促进视神经萎缩症蛋白的组蛋白去乙酰化,从而抑制眼黑色素瘤的生长。
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Autophagy in healthy aging and disease.自噬在健康衰老和疾病中的作用。
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AMPK activation by ASP4132 inhibits non-small cell lung cancer cell growth.ASP4132 通过激活 AMPK 抑制非小细胞肺癌细胞生长。
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HIF-1α-induced expression of m6A reader YTHDF1 drives hypoxia-induced autophagy and malignancy of hepatocellular carcinoma by promoting ATG2A and ATG14 translation.HIF-1α 诱导的 m6A 阅读器 YTHDF1 通过促进 ATG2A 和 ATG14 的翻译,驱动肝癌的缺氧诱导自噬和恶性转化。
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