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极地多样的病毒组:2012-2014 年南极动物粪便和北极冻土宏基因组数据的回顾性研究。

Diverse viromes in polar regions: A retrospective study of metagenomic data from Antarctic animal feces and Arctic frozen soil in 2012-2014.

机构信息

State Key Laboratory of Virology and National Virus Resource Center, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan 430071, China.

State Key Laboratory of Virology and National Virus Resource Center, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan 430071, China; Xinjiang Key Laboratory of Biological Resources and Genetic Engineering, College of Life Science and Technology, Xinjiang University, Urumqi, 830046, China.

出版信息

Virol Sin. 2022 Dec;37(6):883-893. doi: 10.1016/j.virs.2022.08.006. Epub 2022 Aug 24.

Abstract

Antarctica and the Arctic are the coldest places, containing a high diversity of microorganisms, including viruses, which are important components of polar ecosystems. However, owing to the difficulties in obtaining access to animal and environmental samples, the current knowledge of viromes in polar regions is still limited. To better understand polar viromes, this study performed a retrospective analysis using metagenomic sequencing data of animal feces from Antarctica and frozen soil from the Arctic collected during 2012-2014. The results reveal diverse communities of DNA and RNA viruses from at least 23 families from Antarctic animal feces and 16 families from Arctic soils. Although the viral communities from Antarctica and the Arctic show a large diversity, they have genetic similarities with known viruses from different ecosystems and organisms with similar viral proteins. Phylogenetic analysis of Microviridae, Parvoviridae, and Larvidaviridae was further performed, and complete genomic sequences of two novel circular replication-associated protein (rep)-encoding single-stranded (CRESS) DNA viruses closely related to Circoviridae were identified. These results reveal the high diversity, complexity, and novelty of viral communities from polar regions, and suggested the genetic similarity and functional correlations of viromes between the Antarctica and Arctic. Variations in viral families in Arctic soils, Arctic freshwater, and Antarctic soils are discussed. These findings improve our understanding of polar viromes and suggest the importance of performing follow-up in-depth investigations of animal and environmental samples from Antarctica and the Arctic, which would reveal the substantial role of these viruses in the global viral community.

摘要

南极洲和北极地区是最寒冷的地方,包含着丰富多样的微生物,包括病毒,它们是极地生态系统的重要组成部分。然而,由于难以获得动物和环境样本,目前对极地病毒组的了解仍然有限。为了更好地了解极地病毒组,本研究对 2012 年至 2014 年期间收集的南极洲动物粪便和北极冷冻土壤的宏基因组测序数据进行了回顾性分析。结果显示,南极洲动物粪便中的 DNA 和 RNA 病毒至少来自 23 个科,北极土壤中的病毒来自 16 个科。尽管南极洲和北极地区的病毒群落具有很大的多样性,但它们与不同生态系统中的已知病毒以及具有相似病毒蛋白的生物体具有遗传相似性。对微病毒科、细小病毒科和 Larvidaviridae 进行了系统发育分析,鉴定出了两种与 Circoviridae 密切相关的新型圆形复制相关蛋白(rep)编码单链(CRESS)DNA 病毒的完整基因组序列。这些结果揭示了极地病毒群落的高度多样性、复杂性和新颖性,并表明了南极洲和北极地区病毒组之间的遗传相似性和功能相关性。还讨论了北极土壤、北极淡水和南极土壤中病毒科的变化。这些发现提高了我们对极地病毒组的理解,并表明有必要对来自南极洲和北极地区的动物和环境样本进行后续深入调查,这将揭示这些病毒在全球病毒群落中的重要作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7ce4/9797369/17cefbce089f/gr1.jpg

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