Mathew Alen T, Baidya Anurag T K, Das Bhanuranjan, Devi Bharti, Kumar Rajnish
Department of Pharmaceutical Engineering and Technology, Indian Institute of Technology (BHU), Varanasi, Uttar Pradesh, India.
Proteins. 2023 Feb;91(2):147-160. doi: 10.1002/prot.26417. Epub 2022 Sep 13.
Various posttranslational modifications like hyperphosphorylation, O-GlcNAcylation, and acetylation have been attributed to induce the abnormal folding in tau protein. Recent in vitro studies revealed the possible involvement of N-glycosylation of tau protein in the abnormal folding and tau aggregation. Hence, in this study, we performed a microsecond long all atom molecular dynamics simulation to gain insights into the effects of N-glycosylation on Asn-359 residue which forms part of the microtubule binding region. Trajectory analysis of the stimulations coupled with essential dynamics and free energy landscape analysis suggested that tau, in its N-glycosylated form tends to exist in a largely folded conformation having high beta sheet propensity as compared to unmodified tau which exists in a large extended form with very less beta sheet propensity. Residue interaction network analysis of the lowest energy conformations further revealed that Phe378 and Lys353 are the functionally important residues in the peptide which helped in initiating the folding process and Phe378, Lys347, and Lys370 helped to maintain the stability of the protein in the folded state.
多种翻译后修饰,如过度磷酸化、O-连接的N-乙酰葡糖胺化和乙酰化,都被认为会诱导tau蛋白异常折叠。最近的体外研究表明,tau蛋白的N-糖基化可能参与异常折叠和tau聚集。因此,在本研究中,我们进行了长达微秒的全原子分子动力学模拟,以深入了解N-糖基化对构成微管结合区域一部分的Asn-359残基的影响。对模拟的轨迹分析结合主成分分析和自由能景观分析表明,与未修饰的tau相比,N-糖基化形式的tau倾向于以高度折叠的构象存在,具有较高的β-折叠倾向,而未修饰的tau以非常少的β-折叠倾向以大的伸展形式存在。对最低能量构象的残基相互作用网络分析进一步表明,Phe378和Lys353是肽中功能重要的残基,有助于启动折叠过程,而Phe378、Lys347和Lys370有助于维持蛋白质在折叠状态下的稳定性。