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关于Janus激酶抑制剂药物巴瑞替尼的结构和化学性质的密度泛函理论研究

DFT study on the structural and chemical properties of Janus kinase inhibitor drug Baricitinib.

作者信息

Sonia Chiging, Devi Th Gomti, Karlo T

机构信息

Department of Physics, NERIST, Arunachal Pradesh 791109, India.

Department of Physics, Manipur University, Manipur 795003, India.

出版信息

Mater Today Proc. 2022;65:2586-2595. doi: 10.1016/j.matpr.2022.04.868. Epub 2022 May 11.

Abstract

Baricitinib is a small molecule used to treat moderate to severe rheumatoid arthritis (RA) in adults. It is an inhibitor of Janus kinase 1 and 2 (JAK1 and JAK2). It has also been repurposed as a potential treatment for Covid 19. The current study has been carried out to understand the structural and chemical properties of this molecule. The molecule is optimized by using density functional theory (DFT) method. The DFT calculations are performed using Gaussian 09 W software package. The bond lengths and bond angles between atoms in the molecules are investigated. The intramolecular interaction within the molecule is identified using the natural bond orbital (NBO) study. The atom in molecule (AIM) study is performed using Multiwfn software. All the calculations are performed at B3LYP /6311G++ (d, p) level of theory. The molecular parameters, such as first-order hyperpolarizability, HOMO-LUMO energy gap, global electrophilicity index, dipole moment, chemical potential, hardness, ionization energy and electron affinity are determined from the calculation. The molecular docking analysis of Baricitinib is also carried out against different target proteins such as 6VSB, 6W9C and 6LU7.

摘要

巴瑞替尼是一种用于治疗成人中重度类风湿性关节炎(RA)的小分子药物。它是一种Janus激酶1和2(JAK1和JAK2)抑制剂。它还被重新用作治疗新冠病毒19的潜在药物。目前已开展研究以了解该分子的结构和化学性质。通过使用密度泛函理论(DFT)方法对该分子进行优化。使用高斯09 W软件包进行DFT计算。研究分子中原子之间的键长和键角。使用自然键轨道(NBO)研究确定分子内的分子间相互作用。使用Multiwfn软件进行分子中的原子(AIM)研究。所有计算均在B3LYP /6311G++ (d, p)理论水平上进行。从计算中确定分子参数,如一阶超极化率、HOMO-LUMO能隙、全局亲电指数、偶极矩、化学势、硬度、电离能和电子亲和能。还针对不同的靶蛋白(如6VSB、6W9C和6LU7)进行了巴瑞替尼的分子对接分析。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5069/9395141/6930e97a7ba5/gr1_lrg.jpg

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