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焦亡相关基因特征预测急性髓系白血病的预后并揭示肿瘤免疫微环境特征

The pyroptosis-related gene signature predicts prognosis and reveals characterization of the tumor immune microenvironment in acute myeloid leukemia.

作者信息

Zhou Tao, Qian Kai, Li Yun-Yun, Cai Wen-Ke, Yin Sun-Jun, Wang Ping, He Gong-Hao

机构信息

Department of Clinical Pharmacy, 920th Hospital of Joint Logistics Support Force of People's Liberation Army, Kunming, China.

College of Pharmacy, Dali University, Dali, China.

出版信息

Front Pharmacol. 2022 Aug 10;13:951480. doi: 10.3389/fphar.2022.951480. eCollection 2022.

Abstract

Pyroptosis is a novel inflammatory form of programmed cell death and a prospective target for cancer therapy. Nevertheless, little is known about the association between pyroptosis-related genes (PRGs) and acute myeloid leukemia (AML) prognosis. Herein, we systematically investigated the specific functions and clinical prognostic value of multiple PRGs in AML. Univariate and LASSO Cox regression analyses based on TCGA and GTEx databases were used to generate the PRG signature, whose predictive efficacy of survival was evaluated using survival analysis, ROC, univariate and multivariate Cox analyses as well as subgroup analysis. The BeatAML cohort was used for data validation. The association between risk score and immune cell infiltration, HLA, immune checkpoints, cancer stem cell (CSC), tumor mutation burden (TMB), and therapeutic drug sensitivity were also analyzed. Six -PRG signatures, namely, , , , , , and were generated. The high-risk score represented a poorer prognosis and the PRG risk score was also validated as an independent predictor of prognosis. A nomogram including the cytogenetic risk, age, and risk score was constructed for accurate prediction of 1-, 3-, and 5-year survival probabilities. Meanwhile, this risk score was significantly associated with the tumor immune microenvironment (TIME). A high-risk score is characterized by high immune cell infiltration, HLA, and immune checkpoints, as well as low CSC and TMB. In addition, patients with low-risk scores presented significantly lower IC50 values for ATRA, cytarabine, midostaurin, doxorubicin, and etoposide. Our findings might contribute to further understanding of PRGs in the prognosis and development of AML and provide novel and reliable biomarkers for its precise prevention and treatment.

摘要

细胞焦亡是一种新型的程序性细胞死亡炎症形式,也是癌症治疗的一个潜在靶点。然而,关于细胞焦亡相关基因(PRGs)与急性髓系白血病(AML)预后之间的关联,我们所知甚少。在此,我们系统地研究了多种PRGs在AML中的具体功能和临床预后价值。基于TCGA和GTEx数据库进行单变量和LASSO Cox回归分析,以生成PRG特征,使用生存分析、ROC、单变量和多变量Cox分析以及亚组分析来评估其对生存的预测效力。使用BeatAML队列进行数据验证。还分析了风险评分与免疫细胞浸润、HLA、免疫检查点、癌症干细胞(CSC)、肿瘤突变负担(TMB)和治疗药物敏感性之间的关联。生成了六个PRG特征,即 、 、 、 、 和 。高风险评分代表较差的预后,并且PRG风险评分也被验证为预后的独立预测因子。构建了一个包括细胞遗传学风险、年龄和风险评分的列线图,用于准确预测1年、3年和5年的生存概率。同时,该风险评分与肿瘤免疫微环境(TIME)显著相关。高风险评分的特征是免疫细胞浸润、HLA和免疫检查点水平高,而CSC和TMB水平低。此外,低风险评分的患者对全反式维甲酸、阿糖胞苷、米哚妥林、多柔比星和依托泊苷的IC50值显著较低。我们的研究结果可能有助于进一步了解PRGs在AML预后和发展中的作用,并为其精确预防和治疗提供新的可靠生物标志物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/061b/9399441/4f4084f8cd34/fphar-13-951480-g001.jpg

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