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m6A调控的免疫相关lncRNAs在吸烟相关肺鳞状细胞癌中的分子特征、预后价值及免疫景观关联的综合分析

Comprehensive analysis of molecular features, prognostic values, and immune landscape association of m6A-regulated immune-related lncRNAs in smoking-associated lung squamous cell carcinoma.

作者信息

Zhang Meng, Zhang Jian, Liu Yang

机构信息

School of Medicine, Nankai University, Tianjin, China.

Department of Thoracic Surgery, The First Medical Centre, Chinese PLA General Hospital, Beijing, China.

出版信息

Front Genet. 2022 Aug 10;13:887477. doi: 10.3389/fgene.2022.887477. eCollection 2022.

Abstract

Lung squamous cell carcinoma (LUSC) is the second most common histopathological subtype of lung cancer, and smoking is the leading cause of this type of cancer. However, the critical factors that directly affect the survival rate and sensitivity to immunotherapy of smoking LUSC patients are still unknown. Previous studies have highlighted the role of N6-methyladenosine (m6A) RNA modification, the most common epigenetic modification in eukaryotic species, together with immune-related long non-coding RNAs (lncRNAs) in promoting the development and progression of tumors. Thus, elucidating m6A-modified immune lncRNAs in LUSC patients with smoking history is vital. In this study, we described the expression and mutation features of the 24 m6A-related regulators in the smoking-associated LUSC cohort from The Cancer Genome Atlas (TCGA) database. Then, two distinct subtypes based on the expression levels of the prognostic m6A-regulated immune lncRNAs were defined, and differentially expressed genes (DEGs) between the subtypes were identified. The distributions of clinical characteristics and the tumor microenvironment (TME) between clusters were analyzed. Finally, we established a lncRNA-associated risk model and exhaustively clarified the clinical features, prognosis, immune landscape, and drug sensitivity on the basis of this scoring system. Our findings give insight into potential mechanisms of LUSC tumorigenesis and development and provide new ideas in offering LUSC patients with individual and effective immunotherapies.

摘要

肺鳞状细胞癌(LUSC)是肺癌中第二常见的组织病理学亚型,吸烟是这类癌症的主要病因。然而,直接影响吸烟的LUSC患者生存率和免疫治疗敏感性的关键因素仍不清楚。先前的研究强调了N6-甲基腺苷(m6A)RNA修饰(真核生物中最常见的表观遗传修饰)以及免疫相关长链非编码RNA(lncRNA)在促进肿瘤发生和发展中的作用。因此,阐明有吸烟史的LUSC患者中m6A修饰的免疫lncRNA至关重要。在本研究中,我们描述了来自癌症基因组图谱(TCGA)数据库的吸烟相关LUSC队列中24种m6A相关调节因子的表达和突变特征。然后,根据预后性m6A调节的免疫lncRNA的表达水平定义了两种不同的亚型,并鉴定了亚型之间的差异表达基因(DEG)。分析了各簇之间临床特征和肿瘤微环境(TME)的分布。最后,我们建立了一个lncRNA相关风险模型,并在此评分系统的基础上详尽阐明了临床特征、预后、免疫格局和药物敏感性。我们的研究结果深入了解了LUSC肿瘤发生和发展的潜在机制,并为为LUSC患者提供个性化有效免疫治疗提供了新思路。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6c03/9399351/834918b8df8c/fgene-13-887477-g001.jpg

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