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早期肺腺癌中 mA 调节剂的临床意义、免疫浸润和生物学作用的综合分析。

Comprehensive Analysis of Clinical Significance, Immune Infiltration and Biological Role of mA Regulators in Early-Stage Lung Adenocarcinoma.

机构信息

Department of Thoracic Surgery, National Cancer Center/National Clinical Research Center for Cancer/Cancer Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China.

出版信息

Front Immunol. 2021 Sep 28;12:698236. doi: 10.3389/fimmu.2021.698236. eCollection 2021.

Abstract

Recent publications have revealed that N6-methyladenosine (mA) modification is critically involved in tumorigenesis and metastasis. However, the correlation of mA modification and immune infiltration in early-stage lung adenocarcinoma (LUAD) is still uncertain. We performed NMF clustering based on 23 mA regulators and identify three distinct mA clusters and three mA related genes clusters (mA cluster-R) in early-stage LUAD. The immune infiltrating levels were calculated using CIBERSORT, MCPcounter and ssGSEA algorithms. And we established the mA-predictive score to quantify mA modified phenotypes and predict immunotherapeutic responses. Based on the TME characteristics, different immune profiles were also identified among three mA gene-related clusters. And the mA-R-C2 was related to a favorable overall survival (OS), whereas mA-R-C3 had unfavorable overall survival. The mA-predictive score was built according to the expression levels of mA-related genes, and patients could be stratified into subgroups with low/high scores. Patients with high scores had poor overall survival, enhanced immune infiltration, high tumor mutation burden and increased level of somatic mutation. Besides, patients with high scores had unfavorable overall survival in the anti-PD-1 cohort, whereas the overall survival of high-score patients was better in the adoptive T cell therapy cohort. Our work highlights that mA modification is closely related to immune infiltration in early-stage LUAD, which also contributes to the development of more effective immunotherapy strategies.

摘要

最近的出版物表明,N6-甲基腺苷(mA)修饰在肿瘤发生和转移中起着至关重要的作用。然而,mA 修饰与早期肺腺癌(LUAD)中的免疫浸润的相关性尚不确定。我们基于 23 个 mA 调节剂进行 NMF 聚类,在早期 LUAD 中鉴定出三个不同的 mA 簇和三个 mA 相关基因簇(mA 簇-R)。使用 CIBERSORT、MCPcounter 和 ssGSEA 算法计算免疫浸润水平。我们建立了 mA 预测评分来量化 mA 修饰表型并预测免疫治疗反应。基于 TME 特征,在三个 mA 基因相关簇中也鉴定出不同的免疫特征。mA-R-C2 与良好的总生存期(OS)相关,而 mA-R-C3 与不良的总生存期相关。mA 预测评分是根据 mA 相关基因的表达水平构建的,患者可以根据评分分为低/高评分亚组。高评分患者的总生存期较差,免疫浸润增强,肿瘤突变负担增加,体细胞突变水平升高。此外,在抗 PD-1 队列中,高评分患者的总生存期较差,而在过继 T 细胞治疗队列中,高评分患者的总生存期较好。我们的工作强调了 mA 修饰与早期 LUAD 中的免疫浸润密切相关,这也有助于开发更有效的免疫治疗策略。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e159/8505809/96096646179d/fimmu-12-698236-g001.jpg

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