Department of Life and Environmental Sciences, University of California, Merced, CA, United States.
Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA, United States.
J Hered. 2022 Nov 30;113(6):689-698. doi: 10.1093/jhered/esac044.
Efforts to protect the ecologically and economically significant California Current Ecosystem from global change will greatly benefit from data about patterns of local adaptation and population connectivity. To facilitate that work, we present a reference-quality genome for the giant pink sea star, Pisaster brevispinus, a species of ecological importance along the Pacific west coast of North America that has been heavily impacted by environmental change and disease. We used Pacific Biosciences HiFi long sequencing reads and Dovetail Omni-C proximity reads to generate a highly contiguous genome assembly of 550 Mb in length. The assembly contains 127 scaffolds with a contig N50 of 4.6 Mb and a scaffold N50 of 21.4 Mb; the BUSCO completeness score is 98.70%. The P. brevispinus genome assembly is comparable to the genome of the congener species P. ochraceus in size and completeness. Both Pisaster assemblies are consistent with previously published karyotyping results showing sea star genomes are organized into 22 autosomes. The reference genome for P. brevispinus is an important first step toward the goal of producing a comprehensive, population genomics view of ecological and evolutionary processes along the California coast. This resource will help scientists, managers, and policy makers in their task of understanding and protecting critical coastal regions from the impacts of global change.
为了保护具有重要生态和经济意义的加利福尼亚洋流生态系统免受全球变化的影响,了解当地适应模式和种群连通性的数据将大有裨益。为此,我们提供了太平洋巨型海星(Pisaster brevispinus)的参考质量基因组,这种海星是北美的太平洋西海岸具有重要生态意义的物种,受到环境变化和疾病的严重影响。我们使用 Pacific Biosciences HiFi 长测序reads 和 Dovetail Omni-C proximity reads 生成了一个高度连续的基因组组装,长度为 550Mb。组装包含 127 个支架,其 contig N50 为 4.6Mb,scaffold N50 为 21.4Mb;BUSCO 完整性评分为 98.70%。P. brevispinus 基因组组装的大小和完整性可与同属物种 P. ochraceus 的基因组相媲美。两个 Pisaster 基因组组装与先前公布的染色体组型结果一致,表明海星基因组组织为 22 条常染色体。P. brevispinus 的参考基因组是实现全面的、基于种群基因组学的加利福尼亚海岸生态和进化过程视图的重要第一步。该资源将有助于科学家、管理者和政策制定者理解和保护关键沿海地区免受全球变化影响的任务。