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Bcl-2的疏水裂缝与BH4结构域之间的变构串扰对肌醇1,4,5-三磷酸受体活性的调控

Allosteric cross-talk between the hydrophobic cleft and the BH4 domain of Bcl-2 in control of inositol 1,4,5-trisphosphate receptor activity.

作者信息

Shapovalov George, Ritaine Abigaël, Essonghe Nadege Charlene, de Ridder Ian, Ivanova Hristina, Karamanou Spyridoula, Economou Anastassios, Bultynck Geert, Skryma Roman, Prevarskaya Natalia

机构信息

Univ. Lille, Inserm, U1003 - PHYCEL - Physiologie Cellulaire, F-59000 Lille, France.

Laboratory of Excellence, Ion Channels Science and Therapeutics, 59655 Villeneuve d'Ascq, France.

出版信息

Explor Target Antitumor Ther. 2022;3(3):375-391. doi: 10.37349/etat.2022.00088. Epub 2022 Jun 28.

Abstract

AIM

Inositol 1,4,5-trisphosphate receptor (IPR) is a ubiquitous calcium (Ca) channel involved in the regulation of cellular fate and motility. Its modulation by anti-apoptotic protein B-cell lymphoma 2 (Bcl-2) plays an important role in cancer progression. Disrupting this interaction could overcome apoptosis avoidance, one of the hallmarks of cancer, and is, thus, of great interest. Earlier reports have shown the involvement of both the Bcl-2 homology 4 (BH4) and the transmembrane domains (TMDs) of Bcl-2 in regulating IPR activity, while the Bcl-2 hydrophobic cleft was associated primarily with its anti-apoptotic and IPR-independent action at the mitochondria (Oncotarget. 2016;7:55704-20. doi: 10.18632/oncotarget.11005). The aim of this study was to investigate how targeting the BH3 hydrophobic cleft of Bcl-2 affects IPR:Bcl-2 interaction.

METHODS

Organelle membrane-derived (OMD) patch-clamp and circular dichroism (CD) thermal melting experiments were used to elucidate the effects of the ABT-199 (venetoclax) on the IPR:Bcl-2 interaction. Molecular dynamics (MD) simulations of free and ABT-199 bound Bcl-2 were used to propose a molecular model of such interaction.

RESULTS

It was shown that occlusion of Bcl-2's hydrophobic cleft by the drug ABT-199 finely modulates IPR gating in the low open probability (P) regime, characteristic of the basal IPR activity in non-excited cells. Complementary MD simulations allowed to propose a model of this modulation, involving an allosteric interaction with the BH4 domain on the opposite side of Bcl-2.

CONCLUSIONS

Bcl-2 is an important regulator of IPR activity and, thus of Ca release from internal stores and associated processes, including cellular proliferation and death. The presence of multiple regulatory domains in both proteins suggests a complex interaction. Thus, it was found that the occlusion of the hydrophobic cleft of Bcl-2 by ABT-199 disrupts IPR activity, leading to Bcl-2 rebinding with smaller affinity and lesser inhibitory effect. MDs simulations of free and ABT-199 bound Bcl-2 propose a molecular model of such disruption, involving an allosteric interaction with the BH4 domain on the opposite side of Bcl-2.

摘要

目的

肌醇1,4,5 - 三磷酸受体(IPR)是一种普遍存在的钙(Ca)通道,参与细胞命运和运动的调节。抗凋亡蛋白B细胞淋巴瘤2(Bcl - 2)对其的调节在癌症进展中起重要作用。破坏这种相互作用可能克服细胞凋亡逃避这一癌症标志之一,因此备受关注。早期报道显示,Bcl - 2的Bcl - 2同源结构域4(BH4)和跨膜结构域(TMDs)均参与调节IPR活性,而Bcl - 2的疏水裂缝主要与其在线粒体上的抗凋亡及不依赖IPR的作用相关(《肿瘤靶向》。2016年;7:55704 - 20。doi: 10.18632/oncotarget.11005)。本研究的目的是探究靶向Bcl - 2的BH3疏水裂缝如何影响IPR:Bcl - 2相互作用。

方法

采用细胞器膜衍生(OMD)膜片钳和圆二色性(CD)热融实验来阐明ABT - 199(维奈托克)对IPR:Bcl - 2相互作用的影响。对游离的和与ABT - 199结合的Bcl - 2进行分子动力学(MD)模拟,以提出这种相互作用的分子模型。

结果

结果表明,药物ABT - 199对Bcl - 2疏水裂缝的封闭在低开放概率(P)状态下精细调节IPR门控,这是未兴奋细胞中基础IPR活性的特征。互补的MD模拟有助于提出这种调节的模型,涉及与Bcl - 2另一侧的BH4结构域的变构相互作用。

结论

Bcl - 2是IPR活性的重要调节因子,因此也是内部储存钙释放及相关过程(包括细胞增殖和死亡)的重要调节因子。两种蛋白中均存在多个调节结构域,提示存在复杂的相互作用。因此,发现ABT - 199对Bcl - 2疏水裂缝的封闭会破坏IPR活性,导致Bcl - 2以较小的亲和力重新结合且抑制作用减弱。对游离的和与ABT - 199结合的Bcl - 2的MD模拟提出了这种破坏的分子模型,涉及与Bcl - 2另一侧的BH4结构域的变构相互作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/027a/9400710/7f9662470e64/etat-03-100288-g001.jpg

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