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通过硼烯纳米间隙中的电导和隧道电流变化来识别 DNA 核苷酸。

Identification of DNA nucleotides by conductance and tunnelling current variation through borophene nanogaps.

机构信息

Department of Chemistry, Indian Institute of Technology Indore, Indore, Madhya Pradesh, 453552, India.

出版信息

Phys Chem Chem Phys. 2022 Sep 14;24(35):21427-21439. doi: 10.1039/d2cp02093a.

DOI:10.1039/d2cp02093a
PMID:36047510
Abstract

Rapid and inexpensive DNA sequencing is critical to biomedical research and healthcare for the accomplishment of personalized medicine. Solid-state nanopores and nanogaps have marshalled themselves in the fascinating paradigm of nano-research since the advent of its application in DNA sequencing by analyzing the quantum conductance and electric current signals. In this study, the feasibility of the considered borophene nanogaps for DNA sequencing purposes the electronic tunnelling current approach was investigated by utilizing combined density functional theory with non-equilibrium Green's function (DFT-NEGF) techniques. The interaction energy () and the charge density difference (CDD) plots exploit the charge modulation around the nanogap edges due to the presence of each nucleotide. Our results revealed a distinct variation in the tunnelling conductance, as a characteristic fingerprint of each nucleotide at the Fermi level. The calculated tunnelling current variation across the nanogap under an applied bias voltage was also significant due to the effective coupling of nucleotides with the electrode edges. The current was in the picoampere (pA) range, which was fairly higher than the electrical background noise and also experimentally detectable by the canning tunnelling microscopy (STM) technique. Our findings demonstrated that in the borophene nanopore nanogap scenario, the nanogap has several advantages and is a more promising nanobiosensor. Moreover, we also compared our results with various previous experimental and theoretical reports on nanogaps as well as nanopores for gaining better insights.

摘要

快速且廉价的 DNA 测序对于实现个性化医疗的生物医学研究和医疗保健至关重要。自从固态纳米孔和纳米间隙在 DNA 测序中的应用分析量子电导和电流信号以来,它们就在纳米研究的迷人范例中崭露头角。在这项研究中,通过利用结合密度泛函理论和非平衡格林函数(DFT-NEGF)技术,研究了考虑的硼烯纳米间隙在 DNA 测序中的可行性——电子隧道电流方法。相互作用能()和电荷密度差(CDD)图利用了由于每个核苷酸的存在而在纳米间隙边缘周围的电荷调制。我们的结果显示,在费米能级处,每个核苷酸的隧道电导都有明显的变化,这是其特征指纹。由于核苷酸与电极边缘的有效耦合,在施加偏置电压下穿过纳米间隙的隧道电流变化也很显著。电流在皮安(pA)范围内,这比电背景噪声高得多,也可以通过扫描隧道显微镜(STM)技术进行实验检测。我们的研究结果表明,在硼烯纳米孔-纳米间隙情况下,纳米间隙具有多个优势,是一种更有前途的纳米生物传感器。此外,我们还将我们的结果与纳米间隙和纳米孔的各种先前实验和理论报告进行了比较,以获得更好的见解。

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