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从第一性原理出发研究石墨烯纳米带中 DNA 核苷酸的横向电导

Transverse conductance of DNA nucleotides in a graphene nanogap from first principles.

机构信息

Condensed Matter Theory Group, Department of Physics and Astronomy, Box 516, Uppsala University, SE-751 20 Uppsala, Sweden.

出版信息

Nano Lett. 2011 May 11;11(5):1941-5. doi: 10.1021/nl200147x. Epub 2011 Apr 15.

Abstract

The fabrication of nanopores in atomically thin graphene has recently been achieved, and translocation of DNA has been demonstrated. Taken together with an earlier proposal to use graphene nanogaps for the purpose of DNA sequencing, this approach can resolve the technical problem of achieving single-base resolution in electronic nucleobase detection. We have theoretically evaluated the performance of a graphene nanogap setup for the purpose of whole-genome sequencing, by employing density functional theory and the nonequilibrium Green's function method to investigate the transverse conductance properties of nucleotides inside the gap. In particular, we determined the electrical tunneling current variation at finite bias due to changes in the nucleotides orientation and lateral position. Although the resulting tunneling current is found to fluctuate over several orders of magnitude, a distinction between the four DNA bases appears possible, thus ranking the approach promising for rapid whole-genome sequencing applications.

摘要

最近已经实现了原子级薄石墨烯中纳米孔的制造,并证明了 DNA 的易位。结合早期提出的使用石墨烯纳米间隙进行 DNA 测序的建议,这种方法可以解决在电子核碱基检测中实现单碱基分辨率的技术问题。我们通过使用密度泛函理论和非平衡格林函数方法来研究间隙内核苷酸的横向电导特性,从理论上评估了石墨烯纳米间隙设置用于全基因组测序的性能。特别是,我们确定了由于核苷酸取向和侧向位置变化而在有限偏压下的电隧道电流变化。尽管所得的隧道电流发现波动了几个数量级,但似乎有可能区分四种 DNA 碱基,从而为快速全基因组测序应用提供了有希望的方法。

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