Cheong J Z Alex, Irvine Jessica M, Roesemann Shane, Nora Anna, Morgan Courtney E, Daniele Christopher, Kalan Lindsay R, Brennan Meghan B
Department of Medical Microbiology and Immunology, University of Wisconsin-Madison, Madison, WI, USA.
Microbiology Doctoral Training Program, University of Wisconsin-Madison, Madison, WI, USA.
Ther Adv Endocrinol Metab. 2022 Aug 23;13:20420188221118747. doi: 10.1177/20420188221118747. eCollection 2022.
Lower extremity amputations from diabetic foot ulcers (DFUs) are rebounding, and new biomarkers that predict wound healing are urgently needed. Anaerobic bacteria have been associated with persistent ulcers and may be a promising biomarker beyond currently recommended vascular assessments. It is unknown whether anaerobic markers are simply a downstream outcome of peripheral arterial disease (PAD) and ischemia, however. Here, we evaluate associations between two measures of anaerobic bacteria-abundance and metabolic activity-and PAD.
We built a prospective cohort of 37 patients with baseline ankle brachial index (ABI) results. Anaerobic bacteria were measured in two ways: DNA-based total anaerobic abundance using 16S rRNA gene amplicon sequencing and resulting summed relative abundance, and RNA-based metabolic activity based on bacterial read annotation of metatranscriptomic sequencing. PAD was defined three ways: PAD diagnosis, ABI results, and a dichotomous definition of mild ischemia ( normal) based on ABI values. Statistical associations between anaerobes and PAD were evaluated using univariate odds ratios (ORs) or Spearman's correlations.
Total anaerobe abundance was not significantly associated with PAD diagnosis, ABI results, or mild ischemia (OR = 0.47, 95% CI = 0.023-7.23, = 0.60; Spearman's correlation coefficient = 0.24, = 0.17; OR = 0.25, 95% CI = 0.005-5.86, = 0.42). Anaerobic metabolic activity was not significantly associated with PAD diagnosis, ABI results, or mild ischemia (OR = 1.99, 95% CI = 0.17-21.44, = 0.57; Spearman's correlation coefficient = 0.12, = 0.52; OR = 0.90, 95% CI = 0.03-15.16, = 0.94).
Neither anaerobic abundance nor metabolic activity was strongly associated with our three definitions of PAD. Therefore, anaerobic bacteria may offer additional prognostic value when assessing wound healing potential and should be investigated as potential molecular biomarkers for DFU outcomes.
糖尿病足溃疡(DFU)导致的下肢截肢数量正在回升,因此迫切需要能够预测伤口愈合的新生物标志物。厌氧菌与持续性溃疡有关,可能是一种有前景的生物标志物,超越了目前推荐的血管评估指标。然而,尚不清楚厌氧标志物是否仅仅是外周动脉疾病(PAD)和缺血的下游结果。在此,我们评估两种厌氧菌丰度和代谢活性指标与PAD之间的关联。
我们建立了一个包含37例患者的前瞻性队列,这些患者均有基线踝臂指数(ABI)结果。通过两种方式测量厌氧菌:使用16S rRNA基因扩增子测序基于DNA的总厌氧菌丰度及其得出的总相对丰度,以及基于宏转录组测序的细菌读数注释基于RNA的代谢活性。PAD通过三种方式定义:PAD诊断、ABI结果,以及基于ABI值的轻度缺血(正常)的二分定义。使用单变量比值比(OR)或Spearman相关性评估厌氧菌与PAD之间的统计关联。
总厌氧菌丰度与PAD诊断、ABI结果或轻度缺血均无显著关联(OR = 0.47,95%可信区间[CI] = 0.023 - 7.23,P = 0.60;Spearman相关系数 = 0.24,P = 0.17;OR = 0.25,95% CI = 0.005 - 5.86,P = 0.42)。厌氧代谢活性与PAD诊断、ABI结果或轻度缺血均无显著关联(OR = 1.99,95% CI = 0.17 - 21.44,P = 0.57;Spearman相关系数 = 0.12,P = 0.52;OR = 0.90,95% CI = 0.03 - 15.16,P = 0.94)。
厌氧菌丰度和代谢活性与我们对PAD的三种定义均无强烈关联。因此,在评估伤口愈合潜力时,厌氧菌可能具有额外的预后价值,应作为DFU结局的潜在分子生物标志物进行研究。