• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

通过多队列分析鉴定天使综合征中的关键生物标志物

Identification of key biomarkers in Angelman syndrome by a multi-cohort analysis.

作者信息

Li Yong, Shu Junhua, Cheng Ying, Zhou Xiaoqing, Huang Tao

机构信息

Department of Pediatric Intensive Care Unit, Maternal and Child Health Hospital of Hubei Province, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China.

Department of Pediatrics, Maternal and Child Health Hospital of Hubei Province, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China.

出版信息

Front Med (Lausanne). 2022 Aug 16;9:963883. doi: 10.3389/fmed.2022.963883. eCollection 2022.

DOI:10.3389/fmed.2022.963883
PMID:36052323
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9424609/
Abstract

The Angelman Syndrome (AS) is an extreme neurodevelopmental disorder without effective treatments. While most patients with this disease can be diagnosed by genetic testing, there are still a handful of patients have an unrecognized genetic cause for their illness. Thus, novel approaches to clinical diagnosis and treatment are urgently needed. The aim of this study was to identify and characterize differentially expressed genes involved in AS and built potential diagnostic panel for AS by NGS sequencing. A multi-cohort analysis framework was used to analyze stem cell-derived neurons from AS patients in GSE160747 dataset. We identified three differentially expressed genes (ACTN1, ADAMTS2, SLC30A8) differentiates AS patients from controls. Moreover, we validated the expression patterns of these genes in GSE146640, GSE120225. Receiver operating characteristic (ROC) curves analysis demonstrated that these genes could function as potential diagnostic biomarkers [AUC = 1 (95% CI 1-1)]. This study may provide new approach for diagnosing patients with AS and helping to develop novel therapies in treating AS patients.

摘要

天使综合征(AS)是一种严重的神经发育障碍,尚无有效治疗方法。虽然大多数该疾病患者可通过基因检测确诊,但仍有少数患者的病因未被识别。因此,迫切需要新的临床诊断和治疗方法。本研究旨在通过NGS测序鉴定和表征与AS相关的差异表达基因,并构建AS的潜在诊断面板。使用多队列分析框架分析GSE160747数据集中AS患者的干细胞衍生神经元。我们鉴定出三个差异表达基因(ACTN1、ADAMTS2、SLC30A8)可区分AS患者与对照。此外,我们在GSE146640、GSE120225中验证了这些基因的表达模式。受试者工作特征(ROC)曲线分析表明,这些基因可作为潜在的诊断生物标志物[AUC = 1(95% CI 1 - 1)]。本研究可能为诊断AS患者提供新方法,并有助于开发治疗AS患者的新疗法。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/80da/9424609/cb1821d519b2/fmed-09-963883-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/80da/9424609/0363e97adb2a/fmed-09-963883-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/80da/9424609/cb1821d519b2/fmed-09-963883-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/80da/9424609/0363e97adb2a/fmed-09-963883-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/80da/9424609/cb1821d519b2/fmed-09-963883-g002.jpg

相似文献

1
Identification of key biomarkers in Angelman syndrome by a multi-cohort analysis.通过多队列分析鉴定天使综合征中的关键生物标志物
Front Med (Lausanne). 2022 Aug 16;9:963883. doi: 10.3389/fmed.2022.963883. eCollection 2022.
2
An Association Study of DNA Methylation and Gene Expression in Angelman Syndrome: A Bioinformatics Approach.《Angelman 综合征的 DNA 甲基化和基因表达的关联研究:一种生物信息学方法》
Int J Mol Sci. 2022 Aug 15;23(16):9139. doi: 10.3390/ijms23169139.
3
Bioinformatics analyses show dysregulation of calcium-related genes in Angelman syndrome mouse model.生物信息学分析显示,钙相关基因在 Angelman 综合征小鼠模型中失调。
Neurobiol Dis. 2021 Jan;148:105180. doi: 10.1016/j.nbd.2020.105180. Epub 2020 Nov 17.
4
Identification of Diagnostic Biomarkers in Systemic Lupus Erythematosus Based on Bioinformatics Analysis and Machine Learning.基于生物信息学分析和机器学习的系统性红斑狼疮诊断生物标志物的鉴定
Front Genet. 2022 Apr 14;13:865559. doi: 10.3389/fgene.2022.865559. eCollection 2022.
5
Screening Biomarkers for Systemic Lupus Erythematosus Based on Machine Learning and Exploring Their Expression Correlations With the Ratios of Various Immune Cells.基于机器学习的系统性红斑狼疮筛查生物标志物及其与多种免疫细胞比值表达相关性的研究
Front Immunol. 2022 Jun 10;13:873787. doi: 10.3389/fimmu.2022.873787. eCollection 2022.
6
Clinical and Epidemiological Study of Intracranial Tumors in Children and Identification of Diagnostic Biomarkers for the Most Common Tumor Subtype and Their Relationship with the Immune Microenvironment Through Bioinformatics Analysis.通过生物信息学分析对儿童颅内肿瘤的临床和流行病学研究及最常见肿瘤亚型的诊断生物标志物的鉴定及其与免疫微环境的关系。
J Mol Neurosci. 2022 Jun;72(6):1208-1223. doi: 10.1007/s12031-022-02003-z. Epub 2022 Mar 28.
7
Identification of potential blood biomarkers for early diagnosis of schizophrenia through RNA sequencing analysis.通过 RNA 测序分析鉴定精神分裂症早期诊断的潜在血液生物标志物。
J Psychiatr Res. 2022 Mar;147:39-49. doi: 10.1016/j.jpsychires.2022.01.003. Epub 2022 Jan 5.
8
Quantitative proteomic analysis of human plasma using tandem mass tags to identify novel biomarkers for herpes zoster.采用串联质量标签的人血浆定量蛋白质组学分析,以鉴定带状疱疹的新型生物标志物。
J Proteomics. 2020 Aug 15;225:103879. doi: 10.1016/j.jprot.2020.103879. Epub 2020 Jun 30.
9
Identification of biomarkers associated with diagnosis and prognosis of colorectal cancer patients based on integrated bioinformatics analysis.基于整合生物信息学分析鉴定与结直肠癌患者诊断和预后相关的生物标志物。
Gene. 2019 Apr 15;692:119-125. doi: 10.1016/j.gene.2019.01.001. Epub 2019 Jan 14.
10
Identification of A Panel of Serum microRNAs as Biomarkers for Early Detection of Lung Adenocarcinoma.一组血清微小RNA作为早期检测肺腺癌生物标志物的鉴定
J Cancer. 2017 Jan 1;8(1):48-56. doi: 10.7150/jca.16644. eCollection 2017.

引用本文的文献

1
Trans-ancestry epigenome-wide association meta-analysis of DNA methylation with lifetime cannabis use.全血统外显子组关联荟萃分析 DNA 甲基化与终生大麻使用的关系。
Mol Psychiatry. 2024 Jan;29(1):124-133. doi: 10.1038/s41380-023-02310-w. Epub 2023 Nov 7.

本文引用的文献

1
Therapies in preclinical and clinical development for Angelman syndrome.用于治疗 Angelman 综合征的临床前和临床开发疗法。
Expert Opin Investig Drugs. 2021 Jul;30(7):709-720. doi: 10.1080/13543784.2021.1939674. Epub 2021 Jun 28.
2
Epilepsy-Associated UBE3A Deficiency Downregulates Retinoic Acid Signalling Pathway.癫痫相关的泛素蛋白连接酶E3A缺乏下调视黄酸信号通路。
Front Genet. 2021 Apr 28;12:681295. doi: 10.3389/fgene.2021.681295. eCollection 2021.
3
UBE3A-mediated PTPA ubiquitination and degradation regulate PP2A activity and dendritic spine morphology.
UBE3A 介导的 PTPA 泛素化和降解调节 PP2A 的活性和树突棘形态。
Proc Natl Acad Sci U S A. 2019 Jun 18;116(25):12500-12505. doi: 10.1073/pnas.1820131116. Epub 2019 Jun 3.
4
Evaluation of the roles of the cytosolic N-terminus and His-rich loop of ZNT proteins using ZNT2 and ZNT3 chimeric mutants.运用 ZNT2 和 ZNT3 嵌合突变体评估 ZNT 蛋白胞质 N 端和富含组氨酸环的作用。
Sci Rep. 2018 Sep 20;8(1):14084. doi: 10.1038/s41598-018-32372-8.
5
EMPOWERING MULTI-COHORT GENE EXPRESSION ANALYSIS TO INCREASE REPRODUCIBILITY.助力多队列基因表达分析以提高可重复性。
Pac Symp Biocomput. 2017;22:144-153. doi: 10.1142/9789813207813_0015.
6
Angelman Syndrome.安吉尔曼综合征
Neurotherapeutics. 2015 Jul;12(3):641-50. doi: 10.1007/s13311-015-0361-y.
7
SLC30A8 mutations in type 2 diabetes.2型糖尿病中的溶质载体家族30成员8(SLC30A8)突变
Diabetologia. 2015 Jan;58(1):31-6. doi: 10.1007/s00125-014-3405-7. Epub 2014 Oct 7.
8
A missense mutation in the alpha-actinin 1 gene (ACTN1) is the cause of autosomal dominant macrothrombocytopenia in a large French family.一个位于α-辅肌动蛋白 1 基因(ACTN1)的错义突变是一个法国家系常染色体显性遗传性巨血小板减少症的致病原因。
PLoS One. 2013 Sep 17;8(9):e74728. doi: 10.1371/journal.pone.0074728. eCollection 2013.
9
The diabetes-susceptible gene SLC30A8/ZnT8 regulates hepatic insulin clearance.易感糖尿病基因 SLC30A8/ZnT8 调控肝脏胰岛素清除。
J Clin Invest. 2013 Oct;123(10):4513-24. doi: 10.1172/JCI68807. Epub 2013 Sep 24.
10
ACTN1 mutations cause congenital macrothrombocytopenia.ACTN1 突变导致先天性巨血小板减少症。
Am J Hum Genet. 2013 Mar 7;92(3):431-8. doi: 10.1016/j.ajhg.2013.01.015. Epub 2013 Feb 21.