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新属,新种,新属,新种,和新属,新组合,代表了环境 GKS98(betIII)群。

gen. nov., sp. nov., gen. nov., sp. nov. and gen. nov., comb. nov., representing the environmental GKS98 (betIII) cluster.

机构信息

Research Department for Limnology, University of Innsbruck, Mondseestrasse 9, A-5310 Mondsee, Austria.

Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.

出版信息

Int J Syst Evol Microbiol. 2022 Sep;72(9). doi: 10.1099/ijsem.0.005513.

Abstract

We present two strains affiliated with the GKS98 cluster. This phylogenetically defined cluster is representing abundant, mainly uncultured freshwater bacteria, which were observed by many cultivation-independent studies on the diversity of bacteria in various freshwater lakes and streams. Bacteria affiliated with the GKS98 cluster were detected by cultivation-independent methods in freshwater systems located in Europe, Asia, Africa and the Americas. The two strains, LF4-65 (=CCUG 56422=DSM 107630) and MWH-P2sevCIIIb (=CCUG 56420=DSM 107629), are aerobic chemoorganotrophs, both with genome sizes of 3.2 Mbp and G+C values of 52.4 and 51.0 mol%, respectively. Phylogenomic analyses based on concatenated amino acid sequences of 120 proteins suggest an affiliation of the two strains with the family and revealed and (= ) as being the closest related, previously described species. However, the calculated phylogenomic trees clearly suggest that the current genus represents a polyphyletic taxon. Based on the branching order in the phylogenomic trees, as well as the revealed phylogenetic distances and chemotaxonomic traits, we propose to establish the new genus gen. nov. and the new species sp. nov. to harbour strain LF4-65 and the new genus gen. nov. and the new species sp. nov. to harbour strain MWH-P2sevCIIIb. Furthermore, we propose the reclassification of the species in the new genus gen. nov. The new genera , and together represent taxonomically the GKS98 cluster.

摘要

我们介绍了两个与 GKS98 群有关的菌株。这个系统发育定义的群代表了丰富的、主要未培养的淡水细菌,许多关于各种淡水湖泊和溪流中细菌多样性的培养独立研究都观察到了这些细菌。通过培养独立的方法,在欧洲、亚洲、非洲和美洲的淡水系统中检测到与 GKS98 群有关的细菌。这两个菌株 LF4-65(=CCUG 56422=DSM 107630)和 MWH-P2sevCIIIb(=CCUG 56420=DSM 107629),是好氧化能有机营养菌,基因组大小分别为 3.2 Mbp 和 G+C 值为 52.4 和 51.0 mol%。基于 120 种蛋白质的氨基酸序列的系统基因组分析表明,这两个菌株与 和 (= )关系最密切,为以前描述过的最接近的相关物种。然而,计算出的系统基因组树清楚地表明,目前的属 代表了一个多系分类群。基于系统基因组树中的分支顺序,以及揭示的系统发育距离和化学生态特征,我们建议建立新的属 ,以容纳 LF4-65 菌株,建立新的属 ,以容纳 MWH-P2sevCIIIb 菌株。此外,我们建议将物种 重新分类到新的属 中。新属 、 和 共同代表了 GKS98 群的分类学。

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