Zhang Qiu-Mei, Fu Jia-Cheng, Chen Zhi-Qin, Qiu Li-Hong
State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou 510275, PR China.
Int J Syst Evol Microbiol. 2022 Jun;72(6). doi: 10.1099/ijsem.0.005415.
Two aerobic and obligately acidophilic bacteria, designated 4G-K13 and 4Y35, were isolated from the forest soil sampled at Dinghushan Biosphere Reserve, Guangdong Province, PR China. These two strains were Gram-stain-negative, non-motile and short rods that multiplied by binary division. Strains 4G-K13 and 4Y35 had the highest 16S rRNA gene sequence similarity of 97.0 and 97.2 % to DSM 103733 and SBC82, respectively. Phylogenetic trees based on the 16S rRNA gene and whole genome sequences showed consistently that these two strains formed a major clade with members of the genera , , and in the family , but each occupied an unique position. In both the UBCG and the PhyloPhlAn phylogenomic trees, strains 4G-K13 and 4Y35 congruently formed a highly supported subclade with DSM 11244 and DSM 27394, respectively. The major fatty acids (>5 %) of strain 4G-K13 were iso-C, iso-C, summed feature 3 (C 7 and/or C 6) and summed feature 9 (iso-C 9 and/or C 10-methyl), while that of strain 4Y35 were C, C 9, iso-C, summed feature 3 (C 7 and/or C 6) and summed feature 9 (iso-C 9 and/or C 10-methyl). Strain 4G-K13 contained phosphatidylethanolamine, four unidentified phospholipids, four glycolipids, two unidentified aminolipids and two unknown lipids, while strain 4Y35 had phosphatidylethanolamine, three unidentified phospholipids, two glycolipids, five unidentified aminolipids and one unknown polar lipid. The DNA G+C contents of 4G-K13 and 4Y35 were 60.5 and 55.8 mol%, respectively. Based on all these phylogenetic, physiological and chemotaxonomic data, we suggest that strains 4G-K13 and 4Y35 represent two novel species of two novel genera in the family , for which the names gen. nov., sp. nov. (type strain: 4G-K13=GDMCC 1.1195=NBRC 113249) and gen. nov., sp. nov. (type strain: 4Y35=KACC 21728=NBRC 114261) are proposed. We also propose to reclassify and as gen. nov., comb. nov. and comb. nov., respectively, based mainly on the results of phylogenomic analysis.
从中国广东省鼎湖山生物圈保护区采集的森林土壤中分离出两株需氧且专性嗜酸的细菌,分别命名为4G-K13和4Y35。这两株菌革兰氏染色阴性,无运动性,为短杆菌,通过二分分裂繁殖。菌株4G-K13和4Y35的16S rRNA基因序列与DSM 103733和SBC82的最高相似性分别为97.0%和97.2%。基于16S rRNA基因和全基因组序列构建的系统发育树一致显示,这两株菌与该科的 属、 属、 属和 属成员形成一个主要分支,但各自占据独特位置。在UBCG和PhyloPhlAn系统发育基因组树中,菌株4G-K13和4Y35分别与DSM 11244和DSM 27394一致地形成一个得到高度支持的亚分支。菌株4G-K13的主要脂肪酸(>5%)为异-C、异-C、总和特征3(C 7和/或C 6)和总和特征9(异-C 9和/或C 10-甲基),而菌株4Y35的主要脂肪酸为C、C 9、异-C、总和特征3(C 7和/或C 6)和总和特征9(异-C 9和/或C 10-甲基)。菌株4G-K13含有磷脂酰乙醇胺、四种未鉴定的磷脂、四种糖脂、两种未鉴定的氨基脂和两种未知脂类,而菌株4Y35含有磷脂酰乙醇胺、三种未鉴定的磷脂、两种糖脂、五种未鉴定的氨基脂和一种未知极性脂。4G-K13和4Y35的DNA G+C含量分别为60.5 mol%和55.8 mol%。基于所有这些系统发育、生理和化学分类数据,我们建议菌株4G-K13和4Y35代表该科两个新属的两个新物种,为此提出新属名 属,新种 (模式菌株:4G-K13=GDMCC 1.1195=NBRC 113249)和新属名 属,新种 (模式菌株:4Y35=KACC 21728=NBRC 114261)。我们还建议主要基于系统发育基因组分析结果,分别将 和 重新分类为新属名 属,新组合 和 新组合。