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基于细胞焦亡的肝细胞癌两种异质分子亚型的鉴定和验证及预后预测模型

Identification and Validation of Two Heterogeneous Molecular Subtypes and a Prognosis Predictive Model for Hepatocellular Carcinoma Based on Pyroptosis.

机构信息

Institute of Pharmacology & Toxicology, Zhejiang Province Key Laboratory of Anti-Cancer Drug Research, College of Pharmaceutical Sciences, Zhejiang University, Hangzhou 310058, China.

Polytechnic Institute, Zhejiang University, Hangzhou 310058, China.

出版信息

Oxid Med Cell Longev. 2022 Aug 28;2022:8346816. doi: 10.1155/2022/8346816. eCollection 2022.

Abstract

Hepatocellular carcinoma (HCC) is a worldwide malignant cancer with high incidence and mortality. Considering the high heterogeneity of HCC, clarifying molecular characteristics associated with HCC development could help improve patients' outcomes. Pyroptosis is a novel form of cell death and is noted to be implicated in HCC pathogenesis whereas its molecular feature in HCC is unclear. Thus, we intended to clarify the molecular characteristic as well as the clinical significance of pyroptosis for HCC. A systematic bioinformatics analysis was conducted among 40 pyroptosis-related genes based on The Cancer Genome Atlas, the International Cancer Genome Consortium, and the Gene Expression Omnibus databases. A total of 12 HCC-associated pyroptosis-related genes (HPRGs) were identified to be overexpressed in HCC tissues and significantly connected to patients' poor survival. Through consensus clustering based on the HPRGs' expression, we found patients could be stratified into two distinctive pyroptosis subtypes, PyLow and PyHigh. The PyHigh group owned a notable lower survival rate and a higher high-grade proportion compared with the PyLow subtype. Besides, patients' sensitivities to chemotherapeutic drugs also presented distinctive differences between the two subtypes. Indicated by pathway enrichment analysis and immune characteristic difference analysis, the distinctions between the pyroptosis subtypes may be related to tumor immunity. Further, a five-gene risk model composed of , , , , and was established. Subsequent analyses demonstrated that the model could credibly classify patients as low or high risk and was an independent prognostic indicator for HCC. Abnormal expressions of the five genes were validated by biological experiments and new bioinformatics analysis. In conclusion, this study recognized and verified two heterogeneous pyroptosis subtypes and a predictable prognosis model for HCC. Our work may help facilitate the clinical management and treatment of HCC and understand the functions of pyroptosis in oncology.

摘要

肝细胞癌(HCC)是一种全球范围内发病率和死亡率都很高的恶性肿瘤。鉴于 HCC 的高度异质性,阐明与 HCC 发生发展相关的分子特征可能有助于改善患者的预后。细胞焦亡是一种新型的细胞死亡形式,据报道与 HCC 发病机制有关,但其在 HCC 中的分子特征尚不清楚。因此,我们旨在阐明细胞焦亡在 HCC 中的分子特征及其临床意义。我们对来自癌症基因组图谱(TCGA)、国际癌症基因组联盟(ICGC)和基因表达综合数据库(GEO)的 40 个与细胞焦亡相关的基因进行了系统的生物信息学分析。共鉴定出 12 个与 HCC 相关的与细胞焦亡相关的基因(HPRGs)在 HCC 组织中过度表达,并与患者的不良生存显著相关。通过基于 HPRGs 表达的共识聚类,我们发现患者可以分为两个明显不同的细胞焦亡亚型,PyLow 和 PyHigh。与 PyLow 亚型相比,PyHigh 组的生存率显著降低,高级别比例更高。此外,两种亚型患者对化疗药物的敏感性也存在明显差异。通过通路富集分析和免疫特征差异分析表明,细胞焦亡亚型的差异可能与肿瘤免疫有关。进一步,建立了一个由、、、和组成的五基因风险模型。后续分析表明,该模型能够可靠地将患者分为低风险或高风险组,并且是 HCC 的独立预后指标。通过生物学实验和新的生物信息学分析验证了这五个基因的异常表达。总之,本研究鉴定并验证了两种异质性细胞焦亡亚型和一个可预测 HCC 预后的模型。我们的工作可能有助于促进 HCC 的临床管理和治疗,并深入了解细胞焦亡在肿瘤学中的作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/128d/9441383/da8fe1a15253/OMCL2022-8346816.001.jpg

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