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外泌体MEF2C在调节CD36转录中与结直肠癌进展的关联

Exosomal MEF2C's Association With the Progression of CRC in Regulating CD36 Transcription.

作者信息

Wang Meng, Jiang Yujuan, Fan Zhi-Lu, Zhang Na, Liang Jianwei, Zheng Zhaoxu

出版信息

Altern Ther Health Med. 2023 Jan;29(1):198-209.

Abstract

CONTEXT

Exosomes are biologically active, extracellular vesicles that are involved in tumor-related processes, including activating tumors, facilitating tumor growth, and promoting inflammation.

OBJECTIVE

The study intended to investigate microRNAs (miRNAs) in exosomes that are associated with colorectal cancer (CRC).

DESIGN

The research team performed bioinformatics analysis, extracting RNA-sequencing (RNA-seq) datasets from the Cancer Genome Atlas (TCGA); ExoRBase, a database of different types of RNA information that scientists have extracted from human exosomes; and the Gene Expression Omnibus (GEO) databases, and analyzed the data.

SETTING

The study took place at the Department of Colorectal Surgery at the Chinese Academy of Medical Sciences and Peking Union Medical College in Beijing, China.

PARTICIPANTS

From October 2020 to March 2021, a total of 28 CRC patients who underwent curative resection at the National Cancer Center were enrolled. Tumor samples and tumor-adjacent normal sample were obtained from these CRC patients. Postoperative pathological characteristics all shown adenocarcinoma. The research team recruited participants from the hospitals connected with CAMS and PUMC and obtained written informed consent from them for publication of a case report and any accompanying images. The Ethics Committee of the Cancer Institute (Hospital), CAMS & PUMC has officially recognized the study (NCC 2017-YZ-026).

OUTCOME MEASURES

The research team: (1) extracted RNA-seq datasets from the TCGA, exoRBase and GEO and analyzed the differentially expressed genes (DEGs); (2) performed a cluster analysis of variant genes using weighted gene co-expression network analysis (WGCNA);(3) verified expression of myocyte enhancer factor 2C-genecards (MEF2C) and cluster of differentiation 36 (CD36) in CRC tissues; (4) explored the biological function of the MEF2C by performing proliferation, migration, and invasion assays; and (5) used a chromatin immunoprecipitation (ChIP) experiment to analyze mechanisms to reveal CD36 transcription regulated by exosomal MEF2C.

RESULTS

A significant mean difference in exosomal MEF2C existed between normal and tumor tissues. By performing a correlation analysis, the research team found 609 potential target points of exosomal MEF2C (r > 0.5, P < .05). Weighted correlation network analysis (WGCNA) and protein-protein interaction (PPI) network analysis indicated that CD36 may be the target of exosomal MEF2C. Univariate, multivariate, and Kaplan-Meier analyses showed that CD36 was closely related to the overall survival (OS) of CRC patients. Obvious differences existed in the expression levels of MEF2C and CD36 in CRC and normal tissues according to qPCR and immunohistochemical assays. Functional-experiments analysis in vitro showed that exosomal-MEF2C could be considered as an antioncogene. Mechanistically, ChIP assays showed that MEF2C regulated the transcriptional level of CD 36; thus, the expression of CD36 increased significantly.

CONCLUSION

MEF2C is a potential biomarker of a favorable prognosis in CRC and is related to the progression of CRC. Moreover, the MEF2C-CD36 pathway may reveal the tumor regulation mechanism in CRC. The exosomal MEF2C was the hub gene in exosomes, with CD36 was identified as the potential target. Exosomal MEF2C may be a promising molecular biomarker for predicting a good prognosis and may have potential as a medical target for CRC.

摘要

背景

外泌体是具有生物活性的细胞外囊泡,参与肿瘤相关过程,包括激活肿瘤、促进肿瘤生长和引发炎症。

目的

本研究旨在调查与结直肠癌(CRC)相关的外泌体中的微小RNA(miRNA)。

设计

研究团队进行了生物信息学分析,从癌症基因组图谱(TCGA)、ExoRBase(一个科学家从人类外泌体中提取的不同类型RNA信息的数据库)和基因表达综合数据库(GEO)中提取RNA测序(RNA-seq)数据集,并对数据进行分析。

地点

该研究在中国北京的中国医学科学院北京协和医学院结直肠外科进行。

参与者

2020年10月至2021年3月,共有28例在国家癌症中心接受根治性切除的CRC患者入组。从这些CRC患者身上获取肿瘤样本和肿瘤旁正常样本。术后病理特征均显示为腺癌。研究团队从与中国医学科学院和北京协和医学院相关的医院招募参与者,并获得他们关于发表病例报告及任何附带图像的书面知情同意。中国医学科学院肿瘤医院(研究所)伦理委员会已正式认可该研究(NCC 2017-YZ-026)。

观察指标

研究团队:(1)从TCGA、ExoRBase和GEO中提取RNA-seq数据集并分析差异表达基因(DEG);(2)使用加权基因共表达网络分析(WGCNA)对变异基因进行聚类分析;(3)验证结直肠癌组织中肌细胞增强因子2C基因卡(MEF2C)和分化簇36(CD36)的表达;(4)通过进行增殖、迁移和侵袭实验探索MEF2C的生物学功能;(5)使用染色质免疫沉淀(ChIP)实验分析机制,以揭示外泌体MEF2C对CD36转录的调控。

结果

正常组织和肿瘤组织中外泌体MEF2C存在显著的平均差异。通过相关性分析,研究团队发现外泌体MEF2C有609个潜在靶点(r>0.5,P<0.05)。加权相关网络分析(WGCNA)和蛋白质-蛋白质相互作用(PPI)网络分析表明,CD36可能是外泌体MEF2C的靶点。单因素、多因素和Kaplan-Meier分析表明,CD36与CRC患者的总生存期(OS)密切相关。根据qPCR和免疫组织化学检测,CRC组织和正常组织中MEF2C和CD36的表达水平存在明显差异。体外功能实验分析表明,外泌体MEF2C可被视为一种抑癌基因。机制上,ChIP实验表明MEF2C调节CD36的转录水平;因此,CD36的表达显著增加。

结论

MEF2C是CRC中预后良好的潜在生物标志物,与CRC的进展相关。此外,MEF2C-CD36通路可能揭示CRC中的肿瘤调控机制。外泌体MEF2C是外泌体中的枢纽基因,CD36被确定为潜在靶点。外泌体MEF2C可能是预测良好预后的有前景的分子生物标志物,并且可能具有作为CRC医学靶点的潜力。

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