Dhakate Priyanka, Sehgal Deepmala, Vaishnavi Samantha, Chandra Atika, Singh Apekshita, Raina Soom Nath, Rajpal Vijay Rani
National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi, India.
International Maize and Wheat Improvement Center (CIMMYT), México-Veracruz, Mexico.
Front Genet. 2022 Aug 23;13:876987. doi: 10.3389/fgene.2022.876987. eCollection 2022.
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats)/Cas (CRISPR-associated) system was initially discovered as an underlying mechanism for conferring adaptive immunity to bacteria and archaea against viruses. Over the past decade, this has been repurposed as a genome-editing tool. Numerous gene editing-based crop improvement technologies involving CRISPR/Cas platforms individually or in combination with next-generation sequencing methods have been developed that have revolutionized plant genome-editing methodologies. Initially, CRISPR/Cas nucleases replaced the earlier used sequence-specific nucleases (SSNs), such as zinc-finger nucleases (ZFNs) and transcription activator-like effector nucleases (TALENs), to address the problem of associated off-targets. The adaptation of this platform led to the development of concepts such as epigenome editing, base editing, and prime editing. Epigenome editing employed epi-effectors to manipulate chromatin structure, while base editing uses base editors to engineer precise changes for trait improvement. Newer technologies such as prime editing have now been developed as a "search-and-replace" tool to engineer all possible single-base changes. Owing to the availability of these, the field of genome editing has evolved rapidly to develop crop plants with improved traits. In this review, we present the evolution of the CRISPR/Cas system into new-age methods of genome engineering across various plant species and the impact they have had on tweaking plant genomes and associated outcomes on crop improvement initiatives.
CRISPR(成簇规律间隔短回文重复序列)/Cas(CRISPR相关蛋白)系统最初被发现是细菌和古细菌抵御病毒的适应性免疫的潜在机制。在过去十年中,它已被重新用作一种基因组编辑工具。已经开发出许多基于基因编辑的作物改良技术,这些技术单独或与下一代测序方法结合使用CRISPR/Cas平台,彻底改变了植物基因组编辑方法。最初,CRISPR/Cas核酸酶取代了早期使用的序列特异性核酸酶(SSN),如锌指核酸酶(ZFN)和转录激活样效应物核酸酶(TALEN),以解决相关的脱靶问题。该平台的应用导致了表观基因组编辑、碱基编辑和引导编辑等概念的发展。表观基因组编辑采用表观效应器来操纵染色质结构,而碱基编辑则使用碱基编辑器来设计精确的变化以改善性状。诸如引导编辑等更新的技术现已被开发为一种“搜索并替换”工具,以设计所有可能的单碱基变化。由于这些技术的可用性,基因组编辑领域迅速发展,以培育具有改良性状的作物。在本综述中,我们展示了CRISPR/Cas系统向跨多种植物物种的新一代基因组工程方法的演变,以及它们对调整植物基因组的影响以及对作物改良计划的相关成果。