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多模态数据整合平台,结合蛛网膜下腔出血后癫痫的临床前和临床模型。

Multi-modal data integration platform combining clinical and preclinical models of post subarachnoid hemorrhage epilepsy.

出版信息

Annu Int Conf IEEE Eng Med Biol Soc. 2022 Jul;2022:3459-3463. doi: 10.1109/EMBC48229.2022.9871864.

DOI:10.1109/EMBC48229.2022.9871864
PMID:36086190
Abstract

Subarachnoid hemorrhage (SAH) is a devastating neurological injury that can lead to many downstream complications including epilepsy. Predicting who will get epilepsy in order to find ways to prevent it as well as stratify patients for future interventions is a major challenge given the large number of variables not only related to the injury itself, but also to what happens after the injury. Extensive multimodal data are generated during the process of SAH patient care. In parallel, preclinical models are under development that attempt to imitate the variables observed in patients. Computational tools that consider all variables from both human data and animal models are lacking and demand an integrated, time-dependent platform where researchers can aggregate, store, visualize, analyze, and share the extensive integrated multimodal information. We developed a multi-tier web-based application that is secure, extensible, and adaptable to all available data modalities using flask micro-web framework, python, and PostgreSQL database. The system supports data visualization, data sharing and downloading for offline processing. The system is currently hosted inside the institutional private network and holds [Formula: see text] of data from 164 patients and 71 rodents. Clinical Relevance-Our platform supports clinical and preclinical data management. It allows users to comprehensively visualize patient data and perform visual analytics. These utilities can improve research and clinical practice for subarachnoid hemorrhage and other brain injuries.

摘要

蛛网膜下腔出血(SAH)是一种破坏性的神经损伤,可导致许多下游并发症,包括癫痫。预测哪些患者会患上癫痫,以便找到预防方法,并对未来的干预措施进行分层,这是一项重大挑战,因为不仅与损伤本身有关的变量很多,而且与损伤后发生的情况有关的变量也很多。在 SAH 患者护理过程中会产生大量的多模态数据。与此同时,也在开发临床前模型,以尝试模拟患者中观察到的变量。缺乏考虑来自人类数据和动物模型的所有变量的计算工具,并且需要一个集成的、与时间相关的平台,研究人员可以在该平台上聚合、存储、可视化、分析和共享广泛的集成多模态信息。我们开发了一个基于多层的 Web 应用程序,该应用程序使用 flask 微 Web 框架、python 和 PostgreSQL 数据库,安全、可扩展且适用于所有可用的数据模式。该系统支持数据可视化、数据共享和下载以供离线处理。该系统目前托管在机构内部专用网络中,包含 164 名患者和 71 只啮齿动物的数据[Formula: see text]。临床相关性-我们的平台支持临床和临床前数据管理。它允许用户全面可视化患者数据并执行可视化分析。这些实用程序可以改善蛛网膜下腔出血和其他脑损伤的研究和临床实践。

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