Mahato Chiranjit, Menon Sneha, Singh Abhishek, Afrose Syed Pavel, Mondal Jagannath, Das Dibyendu
Department of Chemical Sciences & Centre for Advanced Functional Materials, Indian Institute of Science Education and Research (IISER) Kolkata Mohanpur West Bengal 741246 India
Tata Institute of Fundamental Research Hyderabad Telangana 500046 India.
Chem Sci. 2022 Jul 18;13(32):9225-9231. doi: 10.1039/d2sc03205h. eCollection 2022 Aug 17.
Herein, we report that short peptides are capable of exploiting their anti-parallel registry to access cross-β stacks to expose more than one catalytic residue, exhibiting the traits of advanced binding pockets of enzymes. Binding pockets decorated with more than one catalytic residue facilitate substrate binding and process kinetically unfavourable chemical transformations. The solvent-exposed guanidinium and imidazole moieties on the cross-β microphases synergistically bind to polarise and hydrolyse diverse kinetically stable model substrates of nucleases and phosphatase. Mutation of either histidine or arginine results in a drastic decline in the rate of hydrolysis. These results not only support the argument of short amyloid peptides as the earliest protein folds but also suggest their interactions with nucleic acid congeners, foreshadowing the mutualistic biopolymer relationships that fueled the chemical emergence of life.
在此,我们报告短肽能够利用其反平行排列进入交叉β折叠,以暴露不止一个催化残基,展现出酶的高级结合口袋的特征。装饰有不止一个催化残基的结合口袋有助于底物结合并进行动力学上不利的化学转化。交叉β微相上暴露于溶剂的胍基和咪唑部分协同结合,使核酸酶和磷酸酶的多种动力学稳定模型底物极化并水解。组氨酸或精氨酸的突变会导致水解速率急剧下降。这些结果不仅支持了短淀粉样肽作为最早蛋白质折叠形式的观点,还表明了它们与核酸同系物的相互作用,预示着推动生命化学起源的互利生物聚合物关系。