脊椎动物 CPEB 蛋白的比较分析定义了两个亚家族,它们在转录后基因调控中具有协调但不同的功能。
Comparative analyses of vertebrate CPEB proteins define two subfamilies with coordinated yet distinct functions in post-transcriptional gene regulation.
机构信息
Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, 08028, Barcelona, Spain.
Institució Catalana de Recerca I Estudis Avançats (ICREA), 08010, Barcelona, Spain.
出版信息
Genome Biol. 2022 Sep 12;23(1):192. doi: 10.1186/s13059-022-02759-y.
BACKGROUND
Vertebrate CPEB proteins bind mRNAs at cytoplasmic polyadenylation elements (CPEs) in their 3' UTRs, leading to cytoplasmic changes in their poly(A) tail lengths; this can promote translational repression or activation of the mRNA. However, neither the regulation nor the mechanisms of action of the CPEB family per se have been systematically addressed to date.
RESULTS
Based on a comparative analysis of the four vertebrate CPEBs, we determine their differential regulation by phosphorylation, the composition and properties of their supramolecular assemblies, and their target mRNAs. We show that all four CPEBs are able to recruit the CCR4-NOT deadenylation complex to repress the translation. However, their regulation, mechanism of action, and target mRNAs define two subfamilies. Thus, CPEB1 forms ribonucleoprotein complexes that are remodeled upon a single phosphorylation event and are associated with mRNAs containing canonical CPEs. CPEB2-4 are regulated by multiple proline-directed phosphorylations that control their liquid-liquid phase separation. CPEB2-4 mRNA targets include CPEB1-bound transcripts, with canonical CPEs, but also a specific subset of mRNAs with non-canonical CPEs.
CONCLUSIONS
Altogether, these results show how, globally, the CPEB family of proteins is able to integrate cellular cues to generate a fine-tuned adaptive response in gene expression regulation through the coordinated actions of all four members.
背景
脊椎动物 CPEB 蛋白在其 3'UTR 的细胞质多聚腺苷酸化元件 (CPE) 上结合 mRNAs,导致其多聚 (A) 尾长的细胞质变化;这可以促进 mRNA 的翻译抑制或激活。然而,迄今为止,CPEB 家族的调节及其作用机制尚未得到系统解决。
结果
基于对四种脊椎动物 CPEB 的比较分析,我们确定了它们通过磷酸化的差异调节、它们的超分子组装的组成和性质以及它们的靶 mRNAs。我们表明,所有四种 CPEB 都能够招募 CCR4-NOT 脱腺苷酸化复合物来抑制翻译。然而,它们的调节、作用机制和靶 mRNAs 定义了两个亚家族。因此,CPEB1 形成核糖核蛋白复合物,这些复合物在单个磷酸化事件后发生重排,并与含有典型 CPE 的 mRNAs 相关。CPEB2-4 受多个脯氨酸导向磷酸化调节,控制其液-液相分离。CPEB2-4 的 mRNA 靶标包括 CPEB1 结合的转录本,具有典型的 CPE,但也包括具有非典型 CPE 的特定亚组 mRNAs。
结论
总之,这些结果表明,CPEB 蛋白家族如何通过所有四个成员的协调作用,整合细胞线索,在基因表达调控中产生精细的适应性反应。