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一个属于新型耐药质粒家族的携带质粒

A Plasmid Carrying in Belonging to a Novel Resistance Plasmid Family.

作者信息

Gómez-Martínez Jessica, Rocha-Gracia Rosa Del Carmen, Bello-López Elena, Cevallos Miguel Angel, Castañeda-Lucio Miguel, López-García Alma, Sáenz Yolanda, Jiménez-Flores Guadalupe, Cortés-Cortés Gerardo, Lozano-Zarain Patricia

机构信息

Posgrado en Microbiología, Centro de Investigaciones en Ciencias Microbiológicas, Instituto de Ciencias, Benemérita Universidad Autónoma de Puebla, Puebla 72570, Mexico.

Programa de Genómica Evolutiva, Centro de Ciencias Genómicas, Universidad Nacional Autónoma de México, Cuernavaca 62210, Mexico.

出版信息

Microorganisms. 2022 Sep 17;10(9):1863. doi: 10.3390/microorganisms10091863.

Abstract

and are the most detected plasmid-encoded carbapenemase genes in . Previous studies have reported plasmid sequences carrying variants, except . In this study, we aimed to characterize a plasmid carrying in a strain isolated from a Mexican hospital. The whole genome of strain PE52 was sequenced using Illumina Miseq 2 × 150 bp, with 5 million paired-end reads. We characterized a 27 kb plasmid (pPE52IMP) that carried . The phylogenetic analysis of RepA in pPE52IMP and 33 plasmids carrying resistance genes reported in the GenBank revealed that pPE52IMP and four plasmids (pMATVIM-7, unnamed (FDAARGOS_570), pD5170990, and pMRVIM0713) were in the same clade. These closely related plasmids belonged to the MOB subfamily and had similar backbones. Another plasmid (p4130-KPC) had a similar backbone to pPE52IMP; however, its RepA was truncated. In these plasmids, the resistance genes , variants, , variants, and were inserted between and resolvase genes. This study describes a new family of plasmids carrying resistance genes, with a similar backbone, the same RepA, and belonging to the MOB subfamily in . In addition, our characterized plasmid harboring (pPE52IMP) belongs to this family.

摘要

blaIMP和blaVIM是在[具体研究对象]中检测到的最常见的质粒编码碳青霉烯酶基因。先前的研究报道了携带blaIMP变体的质粒序列,但不包括[具体情况]。在本研究中,我们旨在对从一家墨西哥医院分离的一株[具体菌株]中携带blaIMP的质粒进行特征分析。使用Illumina Miseq 2×150 bp对[具体菌株]PE52的全基因组进行测序,获得了500万个双端读数。我们鉴定出一个携带blaIMP的27 kb质粒(pPE52IMP)。对pPE52IMP中的RepA以及GenBank中报道的33个携带抗性基因的质粒进行系统发育分析,结果显示pPE52IMP和四个质粒(pMATVIM - 7、未命名的(FDAARGOS_570)、pD5170990和pMRVIM0713)属于同一进化枝。这些密切相关的质粒属于MOB亚家族,具有相似的主干结构。另一个质粒(p4130 - KPC)的主干结构与pPE52IMP相似;然而,其RepA被截断。在这些质粒中,抗性基因blaIMP、blaIMP变体、blaVIM、blaVIM变体和blaOXA被插入到[具体基因]和解离酶基因之间。本研究描述了一个携带抗性基因的新质粒家族,它们具有相似的主干结构、相同的RepA,并且属于[具体对象]中的MOB亚家族。此外,我们鉴定出的携带blaIMP的质粒(pPE52IMP)属于这个家族。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6b62/9501424/1765cb926195/microorganisms-10-01863-g001.jpg

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