Xiong Ye, Qi Yanhua, Pan Ziwen, Wang Shaobo, Li Boyan, Feng Bowen, Xue Hao, Zhao Rongrong, Li Gang
Department of Neurosurgery, Qilu Hospital, Cheeloo College of Medicine, Institute of Brain and Brain-Inspired Science, Shandong University, Jinan, 250012, Shandong, China.
Shandong Key Laboratory of Brain Function Remodeling, Jinan, 250012, Shandong, China.
Cancer Cell Int. 2022 Sep 26;22(1):294. doi: 10.1186/s12935-022-02698-5.
Thymosin family genes (TMSs), biologically important peptides with diverse intracellular and extracellular functions, have been shown to promote the progression of multiple cancers. However, multiomics characterization of TMSs and their role in human cancer prognosis has not been systematically performed.
We performed a comprehensive analysis of TMSs and thymosin β10 (TMSB10) using multiomics data from more than 10,000 tumor samples of 33 cancer types from The Cancer Genome Atlas (TCGA). We used single-sample gene set enrichment analysis (ssGSEA) and the gene set variation analysis (GSVA) algorithm to investigate the differences in tumor microenvironment (TME) cell infiltration and functional annotation for individual tumor samples, respectively. The role of TMSB10 in the malignant progression of glioma, the promotion of macrophage infiltration,and immunosuppressive polarization, and the combination drug efficacy were assessed via biological function assays.
We comprehensively assessed genomic mutations, expression dysregulation, prognosis and immunotherapeutic response across 33 human cancer samples and showed that TMSB10 is specifically overexpressed in almost all types of cancer tissues. Further pan-cancer analysis showed that TMSB10 is closely related to the biological function, immune regulation and prognosis of glioma. Similar results were also found in several public glioma cohorts and our Qilu local cohort. Further integration with other biological experiments revealed the key roles of TMSB10 in the malignant progression of glioma, the promotion of macrophage infiltration and immunosuppressive polarization. We also identified multiple drugs targeting cells with high TMSB10 expression and validated that knockdown of TMSB10 improved the efficacy of selumetinib (a MEK1/2 inhibitor approved by the FDA for the treatment of neurofibromatosis-associated tumors) and anti-PD1 treatment in glioma.
These results indicate that TMSB10 holds promise as a novel prognostic marker and therapeutic target, providing a theoretical basis for the development of more effective and targeted clinical treatment strategies for glioma patients.
胸腺素家族基因(TMSs)是具有多种细胞内和细胞外功能的重要生物活性肽,已被证明可促进多种癌症的进展。然而,尚未系统地对TMSs进行多组学表征及其在人类癌症预后中的作用。
我们使用来自癌症基因组图谱(TCGA)的33种癌症类型的10000多个肿瘤样本的多组学数据,对TMSs和胸腺素β10(TMSB10)进行了全面分析。我们分别使用单样本基因集富集分析(ssGSEA)和基因集变异分析(GSVA)算法来研究单个肿瘤样本的肿瘤微环境(TME)细胞浸润和功能注释的差异。通过生物学功能测定评估TMSB10在胶质瘤恶性进展、促进巨噬细胞浸润和免疫抑制极化以及联合药物疗效中的作用。
我们全面评估了33种人类癌症样本中的基因组突变、表达失调、预后和免疫治疗反应,结果表明TMSB10在几乎所有类型的癌组织中均特异性过表达。进一步的泛癌分析表明,TMSB10与胶质瘤的生物学功能、免疫调节和预后密切相关。在几个公共胶质瘤队列和我们的齐鲁本地队列中也发现了类似结果。与其他生物学实验的进一步整合揭示了TMSB10在胶质瘤恶性进展、促进巨噬细胞浸润和免疫抑制极化中的关键作用。我们还鉴定了多种靶向高TMSB10表达细胞的药物,并验证了敲低TMSB10可提高司美替尼(一种经FDA批准用于治疗神经纤维瘤病相关肿瘤的MEK1/2抑制剂)和抗PD1治疗在胶质瘤中的疗效。
这些结果表明,TMSB10有望成为一种新型的预后标志物和治疗靶点,为开发更有效、更有针对性的胶质瘤患者临床治疗策略提供理论依据。