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工程化巴氏纤维梭菌表面层同源结构域连接糖苷水解酶提高植物生物质溶解。

Engineering Caldicellulosiruptor bescii with Surface Layer Homology Domain-Linked Glycoside Hydrolases Improves Plant Biomass Solubilization.

机构信息

Department of Chemical and Biomolecular Engineering, North Carolina State Universitygrid.40803.3f, Raleigh, North Carolina, USA.

Department of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia, USA.

出版信息

Appl Environ Microbiol. 2022 Oct 26;88(20):e0127422. doi: 10.1128/aem.01274-22. Epub 2022 Sep 28.

Abstract

Extremely thermophilic species solubilize carbohydrates from lignocellulose through glycoside hydrolases (GHs) that can be extracellular, intracellular, or cell surface layer (S-layer) associated. genomes sequenced so far encode at least one surface layer homology domain glycoside hydrolase (SLH-GH), representing six different classes of these enzymes; these can have multiple binding and catalytic domains. Biochemical characterization of a representative from each class was done to determine their biocatalytic features: four SLH-GHs from Caldicellulosiruptor kronotskyensis (Calkro_0111, Calkro_0402, Calkro_0072, and Calkro_2036) and two from Caldicellulosiruptor hydrothermalis (Calhy_1629 and Calhy_2383). Calkro_0111, Calkro_0072, and Calhy_2383 exhibited β-1,3-glucanase activity, Calkro_0402 was active on both β-1,3/1,4-glucan and β-1,4-xylan, Calkro_2036 exhibited activity on both β-1,3/1,4-glucan and β-1,4-glucan, and Calhy_1629 was active only on arabinan. Caldicellulosiruptor bescii, the only species with molecular genetic tools as well as already a strong cellulose degrader, contains only one SLH-GH, Athe_0594, a glucanase that is a homolog of Calkro_2036; the other 5 classes of SLH-GHs are absent in . The secretome, supplemented with individual enzymes or cocktails of SLH-GHs, increased sugar release from sugar cane bagasse and poplar. Expression of non-native SLH-GHs , either associated with the S-layer or as freely secreted enzymes, improved total carbohydrate solubilization of sugar cane bagasse and poplar by up to 45% and 23%, respectively. Most notably, expression of Calkro_0402, a xylanase/glucanase, improved xylose solubilization from poplar and bagasse by over 70% by . While species are already prolific lignocellulose degraders, they can be further improved by the strategy described here. species hold promise as microorganisms that can solubilize the carbohydrate portion of lignocellulose and subsequently convert fermentable sugars into bio-based chemicals and fuels. Members of the genus have surface layer (S-layer) homology domain-associated glycoside hydrolases (SLH-GHs) that mediate attachment to biomass as well as hydrolysis of carbohydrates. Caldicellulosiruptor bescii, the most studied member of the genus, has only one SLH-GH. Expression of SLH-GHs from other species in significantly improved degradation of sugar cane bagasse and poplar. This suggests that this extremely thermophilic bacterium can be engineered to further improve its ability to degrade specific plant biomasses by inserting genes encoding SLH-GHs recruited from other species.

摘要

极端嗜热物种通过糖苷水解酶(GHs)将木质纤维素中的碳水化合物溶解,这些酶可以是细胞外、细胞内或细胞表面层(S 层)相关的。迄今为止测序的基因组至少编码一个表面层同源结构域糖苷水解酶(SLH-GH),代表这些酶的六个不同类别;这些酶可能具有多个结合和催化结构域。对每个类别的代表性酶进行了生化特性分析,以确定其生物催化特性:来自 Caldicellulosiruptor kronotskyensis 的四个 SLH-GHs(Calkro_0111、Calkro_0402、Calkro_0072 和 Calkro_2036)和来自 Caldicellulosiruptor hydrothermalis 的两个 SLH-GHs(Calhy_1629 和 Calhy_2383)。Calkro_0111、Calkro_0072 和 Calhy_2383 表现出β-1,3-葡聚糖酶活性,Calkro_0402 对β-1,3/1,4-葡聚糖和β-1,4-木聚糖均有活性,Calkro_2036 对β-1,3/1,4-葡聚糖和β-1,4-葡聚糖均有活性,Calhy_1629 仅对阿拉伯聚糖有活性。Caldicellulosiruptor bescii 是唯一一种具有分子遗传工具且已经是一种强大的纤维素降解菌的物种,仅含有一种 SLH-GH,即 Athe_0594,它是 Calkro_2036 的同源物,属于葡聚糖酶;其他 5 类 SLH-GHs 在 中不存在。补充了单个酶或 SLH-GHs 鸡尾酒的 secretome 提高了甘蔗渣和杨木的糖释放。非天然 SLH-GHs 的表达,无论是与 S 层相关还是作为自由分泌的酶,都分别提高了甘蔗渣和杨木的总碳水化合物溶解率高达 45%和 23%。值得注意的是,Calkro_0402(木聚糖酶/葡聚糖酶)的表达将杨木和蔗渣中的木糖溶解率提高了 70%以上。虽然 物种已经是高效的木质纤维素降解菌,但通过这里描述的策略可以进一步提高它们的性能。该属的微生物具有表面层(S 层)同源结构域相关的糖苷水解酶(SLH-GHs),可介导与生物质的附着以及碳水化合物的水解。该属中研究最多的成员 Caldicellulosiruptor bescii 仅有一种 SLH-GH。在 中表达其他 物种的 SLH-GHs 显著提高了甘蔗渣和杨木的降解。这表明,这种极其耐热的细菌可以通过插入从其他 物种招募的编码 SLH-GHs 的基因来进一步改进其降解特定植物生物质的能力。

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