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Dicer-1 及其伙伴蛋白 Loqs-PB 生成 microRNA 的结构基础。

Structural basis of microRNA biogenesis by Dicer-1 and its partner protein Loqs-PB.

机构信息

RNA Therapeutics Institute, University of Massachusetts Chan Medical School, 368 Plantation Street, Worcester, MA 01605, USA.

RNA Therapeutics Institute, University of Massachusetts Chan Medical School, 368 Plantation Street, Worcester, MA 01605, USA; Central European Institute of Technology, Masaryk University, Kamenice 5, Brno 62500, Czech Republic.

出版信息

Mol Cell. 2022 Nov 3;82(21):4049-4063.e6. doi: 10.1016/j.molcel.2022.09.002. Epub 2022 Sep 30.

Abstract

In animals and plants, Dicer enzymes collaborate with double-stranded RNA-binding domain (dsRBD) proteins to convert precursor-microRNAs (pre-miRNAs) into miRNA duplexes. We report six cryo-EM structures of Drosophila Dicer-1 that show how Dicer-1 and its partner Loqs‑PB cooperate (1) before binding pre-miRNA, (2) after binding and in a catalytically competent state, (3) after nicking one arm of the pre-miRNA, and (4) following complete dicing and initial product release. Our reconstructions suggest that pre-miRNA binds a rare, open conformation of the Dicer‑1⋅Loqs‑PB heterodimer. The Dicer-1 dsRBD and three Loqs‑PB dsRBDs form a tight belt around the pre-miRNA, distorting the RNA helix to place the scissile phosphodiester bonds in the RNase III active sites. Pre-miRNA cleavage shifts the dsRBDs and partially closes Dicer-1, which may promote product release. Our data suggest a model for how the Dicer‑1⋅Loqs‑PB complex affects a complete cycle of pre-miRNA recognition, stepwise endonuclease cleavage, and product release.

摘要

在动植物中,Dicer 酶与双链 RNA 结合域 (dsRBD) 蛋白协作,将前体 microRNA (pre-miRNA) 转化为 miRNA 双链体。我们报告了六个果蝇 Dicer-1 的冷冻电镜结构,展示了 Dicer-1 及其伴侣 Loqs-PB 如何合作(1)在结合 pre-miRNA 之前,(2)在结合并处于催化能力状态后,(3)在切割 pre-miRNA 的一条臂后,以及(4)在完全切割和初始产物释放后。我们的重建表明,pre-miRNA 结合 Dicer-1⋅Loqs-PB 异二聚体的罕见开放构象。Dicer-1 的 dsRBD 和三个 Loqs-PB dsRBD 形成一个围绕 pre-miRNA 的紧密带,扭曲 RNA 螺旋,将易断的磷酸二酯键置于 RNase III 活性位点中。Pre-miRNA 的切割使 dsRBD 移动并部分关闭 Dicer-1,这可能促进产物释放。我们的数据为 Dicer-1⋅Loqs-PB 复合物如何影响 pre-miRNA 识别、逐步内切酶切割和产物释放的完整循环提供了一个模型。

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