• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利：CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法，用中文像聊天一样搜索，搜遍4000万医学文献。AI智能推荐，让科研检索更轻松。

立即免费搜索

文件翻译

保留排版，准确专业，支持PDF/Word/PPT等文件格式，支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述，25分钟生成高质量综述，智能提取关键信息，辅助科研写作。

立即免费体验

.中假定的E3泛素连接酶基因家族的鉴定、表征及表达谱分析

Identification, characterization, and expression profiling of the putative E3 ubiquitin ligase gene family in .

作者信息

Fang Yuanpeng, Du Qiaoli, Yang Qian, Jiang Junmei, Hou Xiaolong, Yang Zaifu, Zhao Degang, Li Xiangyang, Xie Xin

机构信息

Key Laboratory of Agricultural Microbiology, College of Agriculture, Guizhou University, Guiyang, China.

State Key Laboratory Breeding Base of Green Pesticide and Agricultural Bioengineering, Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Guizhou University, Guiyang, China.

出版信息

Front Microbiol. 2022 Sep 15;13:942302. doi: 10.3389/fmicb.2022.942302. eCollection 2022.

DOI:10.3389/fmicb.2022.942302
PMID:36187972
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9520534/
Abstract

The family is one of the main E3 ubiquitin ligase families in plants. The family has been characterized in several species. However, genome-wide gene identification and expression profiling of the family in response to abiotic stress in remain unclear. In this study, we broadly identified 68 genes in the sorghum genome, including 2 genes, and 1 typical (Ub fusion degradation 2) gene. The gene family was divided into eight subclasses based on homology and conserved domain characteristics. Evolutionary analysis identified 14, 66, and 82 collinear gene pairs in sorghum compared with arabidopsis, rice, and maize, respectively, and a unique tandem repeat pair (/) is present in the sorghum genome. Gene Ontology (GO) enrichment analysis showed that U-box proteins were mainly related to ubiquitination and modification, and various stress responses. Comprehensive analysis of promoters, expression profiling, and gene co-regulation networks also revealed that many sorghum genes may be correlated with multiple stress responses. In summary, our results showed that sorghum contains 68 genes, which may be involved in multiple abiotic stress responses. The findings will support future gene functional studies related to ubiquitination in sorghum.

摘要

该家族是植物中主要的E3泛素连接酶家族之一。该家族已在多个物种中得到表征。然而，关于该家族在应对非生物胁迫时的全基因组基因鉴定和表达谱分析在[具体物种]中仍不清楚。在本研究中，我们在高粱基因组中广泛鉴定出68个[家族名称]基因，包括2个[具体基因类型1]基因和1个典型的[具体基因类型2]（泛素融合降解2）基因。基于同源性和保守结构域特征，该[家族名称]基因家族被分为八个亚类。进化分析分别鉴定出高粱与拟南芥、水稻和玉米相比有14、66和82个共线基因对，并且高粱基因组中存在一个独特的串联重复对（/）。基因本体论（GO）富集分析表明，U-box蛋白主要与泛素化和修饰以及各种应激反应相关。对启动子、表达谱和基因共调控网络的综合分析还表明，许多高粱[家族名称]基因可能与多种应激反应相关。总之，我们的结果表明高粱含有68个[家族名称]基因，它们可能参与多种非生物胁迫反应。这些发现将为未来高粱中与泛素化相关的基因功能研究提供支持。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/af26/9520534/54ad62e7c8b0/fmicb-13-942302-g010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/af26/9520534/7293b5a1704c/fmicb-13-942302-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/af26/9520534/2cc433d1eea9/fmicb-13-942302-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/af26/9520534/9f52360e6b12/fmicb-13-942302-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/af26/9520534/09c5d913b3f7/fmicb-13-942302-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/af26/9520534/e5c2422a1ccf/fmicb-13-942302-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/af26/9520534/e820558a2127/fmicb-13-942302-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/af26/9520534/83c62ea54153/fmicb-13-942302-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/af26/9520534/0d30d9be0ea7/fmicb-13-942302-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/af26/9520534/ccadb14fba3e/fmicb-13-942302-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/af26/9520534/54ad62e7c8b0/fmicb-13-942302-g010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/af26/9520534/7293b5a1704c/fmicb-13-942302-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/af26/9520534/2cc433d1eea9/fmicb-13-942302-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/af26/9520534/9f52360e6b12/fmicb-13-942302-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/af26/9520534/09c5d913b3f7/fmicb-13-942302-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/af26/9520534/e5c2422a1ccf/fmicb-13-942302-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/af26/9520534/e820558a2127/fmicb-13-942302-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/af26/9520534/83c62ea54153/fmicb-13-942302-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/af26/9520534/0d30d9be0ea7/fmicb-13-942302-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/af26/9520534/ccadb14fba3e/fmicb-13-942302-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/af26/9520534/54ad62e7c8b0/fmicb-13-942302-g010.jpg

相似文献

1
Identification, characterization, and expression profiling of the putative E3 ubiquitin ligase gene family in ..中假定的E3泛素连接酶基因家族的鉴定、表征及表达谱分析
Front Microbiol. 2022 Sep 15;13:942302. doi: 10.3389/fmicb.2022.942302. eCollection 2022.
2
Genome-wide identification and transcriptome profiling expression analysis of the U-box E3 ubiquitin ligase gene family related to abiotic stress in maize (Zea mays L.).玉米（Zea mays L.）中与非生物胁迫相关的 U-box E3 泛素连接酶基因家族的全基因组鉴定和转录组谱表达分析。
BMC Genomics. 2024 Feb 1;25(1):132. doi: 10.1186/s12864-024-10040-8.
3
Genome-wide analysis of the U-box E3 ubiquitin ligase enzyme gene family in tomato.番茄 U-box E3 泛素连接酶酶基因家族的全基因组分析。
Sci Rep. 2020 Jun 12;10(1):9581. doi: 10.1038/s41598-020-66553-1.
4
Genome-wide identification and expression analysis of the U-box E3 ubiquitin ligase gene family related to salt tolerance in sorghum ( L.).高粱（L.）中与耐盐性相关的U-box E3泛素连接酶基因家族的全基因组鉴定与表达分析
Front Plant Sci. 2023 Mar 17;14:1141617. doi: 10.3389/fpls.2023.1141617. eCollection 2023.
5
Molecular and Functional Analysis of U-box E3 Ubiquitin Ligase Gene Family in Rice ().水稻 U-box E3 泛素连接酶基因家族的分子与功能分析（）。
Int J Mol Sci. 2021 Nov 8;22(21):12088. doi: 10.3390/ijms222112088.
6
Genome-wide identification and characterization of the C2 domain family in (L.) and expression profiles in response to saline-alkali stress.盐地碱蓬中C2结构域家族的全基因组鉴定、特征分析及对盐碱胁迫的表达谱分析
Physiol Mol Biol Plants. 2022 Sep;28(9):1695-1711. doi: 10.1007/s12298-022-01222-3. Epub 2022 Sep 3.
7
Genome-Wide Identification of the U-Box E3 Ubiquitin Ligase Gene Family in Cabbage ( var. ) and Its Expression Analysis in Response to Cold Stress and Pathogen Infection.甘蓝（变种）中U-Box E3泛素连接酶基因家族的全基因组鉴定及其对低温胁迫和病原菌感染的表达分析
Plants (Basel). 2023 Mar 24;12(7):1437. doi: 10.3390/plants12071437.
8
Genome-wide Identification of WRKY transcription factor family members in sorghum (Sorghum bicolor (L.) moench).高粱（高粱 bicolor (L.) moench）全基因组 WRKY 转录因子家族成员的鉴定。
PLoS One. 2020 Aug 17;15(8):e0236651. doi: 10.1371/journal.pone.0236651. eCollection 2020.
9
Cross-species multiple environmental stress responses: An integrated approach to identify candidate genes for multiple stress tolerance in sorghum (Sorghum bicolor (L.) Moench) and related model species.跨物种多环境胁迫响应：一种鉴定高粱（高粱 bicolor（L.）Moench）和相关模式物种多逆境耐受候选基因的综合方法。
PLoS One. 2018 Mar 28;13(3):e0192678. doi: 10.1371/journal.pone.0192678. eCollection 2018.
10
Genome-wide identification of U-box genes and protein ubiquitination under PEG-induced drought stress in potato.马铃薯 PEG 诱导干旱胁迫下 U-box 基因和蛋白质泛素化的全基因组鉴定。
Physiol Plant. 2022 Jan;174(1):e13475. doi: 10.1111/ppl.13475. Epub 2021 Jun 20.

引用本文的文献

1
Genome-wide identification of gene family and expression analysis in response to saline-alkali stress in foxtail millet ( L. Beauv).谷子（L. Beauv.）全基因组基因家族鉴定及盐碱胁迫响应表达分析
Front Genet. 2024 Feb 16;15:1356807. doi: 10.3389/fgene.2024.1356807. eCollection 2024.
2
Genome-wide identification and transcriptome profiling expression analysis of the U-box E3 ubiquitin ligase gene family related to abiotic stress in maize (Zea mays L.).玉米（Zea mays L.）中与非生物胁迫相关的 U-box E3 泛素连接酶基因家族的全基因组鉴定和转录组谱表达分析。
BMC Genomics. 2024 Feb 1;25(1):132. doi: 10.1186/s12864-024-10040-8.
3

本文引用的文献

1
Fungal Pathogenesis-Related Cell Wall Biogenesis, with Emphasis on the Maize Anthracnose Fungus .与真菌致病相关的细胞壁生物合成，重点关注玉米炭疽病菌
Plants (Basel). 2022 Mar 23;11(7):849. doi: 10.3390/plants11070849.
2
Histone deacetylase SbHDT701 in Sorghum bicolor reveals functions in response to stress factors by enhancing acetylation.高粱组蛋白去乙酰化酶 SbHDT701 通过增强乙酰化作用响应应激因子的功能。
Pestic Biochem Physiol. 2021 Oct;178:104908. doi: 10.1016/j.pestbp.2021.104908. Epub 2021 Jun 29.
3
The U-box E3 ubiquitin ligase PalPUB79 positively regulates ABA-dependent drought tolerance via ubiquitination of PalWRKY77 in Populus.
Genome-wide identification, evolution and expression pattern analysis of the gene family in .
全基因组范围内对……中基因家族的鉴定、进化及表达模式分析。
Front Plant Sci. 2023 Aug 4;14:1163357. doi: 10.3389/fpls.2023.1163357. eCollection 2023.
4
Genome-wide characterization of ubiquitin-conjugating enzyme gene family explores its genetic effects on the oil content and yield of .泛素结合酶基因家族的全基因组特征分析揭示了其对[作物名称]含油量和产量的遗传效应。 （注：原文中“of ”后面缺少具体作物名称）
Front Plant Sci. 2023 Mar 20;14:1118339. doi: 10.3389/fpls.2023.1118339. eCollection 2023.
U -box E3 泛素连接酶 PalPUB79 通过泛素化调控拟南芥 WRKY77 正向调控 ABA 依赖的干旱胁迫耐受性。
Plant Biotechnol J. 2021 Dec;19(12):2561-2575. doi: 10.1111/pbi.13681. Epub 2021 Aug 22.
4
Genome-wide identification of U-box genes and protein ubiquitination under PEG-induced drought stress in potato.马铃薯 PEG 诱导干旱胁迫下 U-box 基因和蛋白质泛素化的全基因组鉴定。
Physiol Plant. 2022 Jan;174(1):e13475. doi: 10.1111/ppl.13475. Epub 2021 Jun 20.
5
Corrigendum to: Plant U-Box 40 mediates degradation of the brassinosteroid-responsive transcription factor BZR1 in Arabidopsis roots.更正：植物U-Box 40介导拟南芥根中油菜素内酯响应转录因子BZR1的降解
Plant Cell. 2021 Aug 31;33(8):2900. doi: 10.1093/plcell/koab127.
6
Advances on Post-translational Modifications Involved in Seed Germination.种子萌发过程中涉及的翻译后修饰研究进展
Front Plant Sci. 2021 Mar 22;12:642979. doi: 10.3389/fpls.2021.642979. eCollection 2021.
7
Arabidopsis U-box E3 ubiquitin ligase PUB11 negatively regulates drought tolerance by degrading the receptor-like protein kinases LRR1 and KIN7.拟南芥 U-box E3 泛素连接酶 PUB11 通过降解类受体蛋白激酶 LRR1 和 KIN7 负调控抗旱性。
J Integr Plant Biol. 2021 Mar;63(3):494-509. doi: 10.1111/jipb.13058.
8
Apple B-box protein BBX37 regulates jasmonic acid mediated cold tolerance through the JAZ-BBX37-ICE1-CBF pathway and undergoes MIEL1-mediated ubiquitination and degradation.苹果B-box蛋白BBX37通过JAZ-BBX37-ICE1-CBF途径调节茉莉酸介导的耐寒性，并经历MIEL1介导的泛素化和降解。
New Phytol. 2021 Mar;229(5):2707-2729. doi: 10.1111/nph.17050. Epub 2020 Dec 12.
9
The soybean U-box gene GmPUB6 regulates drought tolerance in Arabidopsis thaliana.大豆 U-box 基因 GmPUB6 调控拟南芥的耐旱性。
Plant Physiol Biochem. 2020 Oct;155:284-296. doi: 10.1016/j.plaphy.2020.07.016. Epub 2020 Aug 1.
10
Gene-wide identification and expression analysis of the PMEI family genes in soybean (Glycine max).大豆（Glycine max）中PMEI家族基因的全基因鉴定与表达分析。
3 Biotech. 2020 Aug;10(8):335. doi: 10.1007/s13205-020-02328-9. Epub 2020 Jul 6.