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GIFT:用于自动纤维直径定量分析的 ImageJ 宏。

GIFT: An ImageJ macro for automated fiber diameter quantification.

机构信息

Institute for Biomedical Engineering, Rostock University Medical Center, Rostock, Germany.

出版信息

PLoS One. 2022 Oct 3;17(10):e0275528. doi: 10.1371/journal.pone.0275528. eCollection 2022.

Abstract

This paper details the development and testing of the GIFT macro, which is a freely available program for ImageJ for the automated measurement of fiber diameters in SEM images of electrospun materials. The GIFT macro applies a validated method which distinguishes fiber diameters based on distance frequencies within an image. In this work, we introduce an applied version of the GIFT method which has been designed to be user-friendly while still allowing complete control over the various parameters involved in the image processing steps. The macro quickly processes large data sets and creates results that are reproducible and accurate. The program outputs both raw data and fiber diameter averages, so that the user can quickly assess the results and has the opportunity for further analysis if desired. The GIFT macro was compared directly to other software designed for fiber diameter measurements and was found to have comparable or lower average error, especially when measuring very small fibers, and reduced processing times per image. The macro, detailed instructions for use, and sample images are freely available online (https://github.com/IBMTRostock/GIFT). We believe that the GIFT macro is a valuable new tool for researchers looking to quickly, easily and reliably assess fiber diameters in electrospun materials.

摘要

本文详细介绍了 GIFT 宏的开发和测试,这是一个可免费用于 ImageJ 的程序,用于自动测量静电纺丝材料的扫描电子显微镜图像中的纤维直径。GIFT 宏应用了一种经过验证的方法,该方法根据图像内的距离频率来区分纤维直径。在这项工作中,我们引入了一种应用版本的 GIFT 方法,该方法旨在使用户友好,同时仍然允许完全控制图像处理步骤中涉及的各种参数。该宏可以快速处理大数据集,并生成可重复且准确的结果。该程序输出原始数据和纤维直径平均值,因此用户可以快速评估结果,如果需要,还有机会进行进一步分析。GIFT 宏与专门用于纤维直径测量的其他软件进行了直接比较,发现它具有可比或更低的平均误差,尤其是在测量非常小的纤维时,并且每幅图像的处理时间减少。该宏、详细的使用说明和示例图像可在网上免费获取(https://github.com/IBMTRostock/GIFT)。我们相信,GIFT 宏是研究人员快速、轻松、可靠地评估静电纺丝材料中纤维直径的一种有价值的新工具。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7f8d/9529089/dda4d76efea9/pone.0275528.g001.jpg

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