Department of Biology, University of Washington, Seattle, WA 98105-1800.
Proc Natl Acad Sci U S A. 2022 Oct 11;119(41):e2206986119. doi: 10.1073/pnas.2206986119. Epub 2022 Oct 3.
The corepressor TOPLESS (TPL) and its paralogs coordinately regulate a large number of genes critical to plant development and immunity. As in many members of the larger pan-eukaryotic Tup1/TLE/Groucho corepressor family, TPL contains a Lis1 Homology domain (LisH), whose function is not well understood. We have previously found that the LisH in TPL-and specifically the N-terminal 18 amino acid alpha-helical region (TPL-H1)-can act as an autonomous repression domain. We hypothesized that homologous domains across diverse LisH-containing proteins could share the same function. To test that hypothesis, we built a library of H1s that broadly sampled the sequence and evolutionary space of LisH domains, and tested their activity in a synthetic transcriptional repression assay in . Using this approach, we found that repression activity was highly conserved and likely the ancestral function of this motif. We also identified key residues that contribute to repressive function. We leveraged this new knowledge for two applications. First, we tested the role of mutations found in somatic cancers on repression function in two human LisH-containing proteins. Second, we validated function of many of our repression domains in plants, confirming that these sequences should be of use to synthetic biology applications across many eukaryotes.
共抑制因子 TOPLESS(TPL)及其同源物协同调节了大量对植物发育和免疫至关重要的基因。与更大的泛真核 Tup1/TLE/Groucho 共抑制因子家族的许多成员一样,TPL 含有 Lis1 同源结构域(LisH),但其功能尚不清楚。我们之前发现,TPL 中的 LisH——特别是 N 端 18 个氨基酸的α螺旋区(TPL-H1)——可以作为一个自主抑制结构域发挥作用。我们假设,不同 LisH 蛋白中的同源结构域可能具有相同的功能。为了验证这一假设,我们构建了一个包含 LisH 结构域的 H1 文库,该文库广泛地对 LisH 结构域的序列和进化空间进行了采样,并在. 中的一个合成转录抑制测定中测试了它们的活性。通过这种方法,我们发现抑制活性高度保守,可能是该基序的原始功能。我们还确定了对抑制功能有贡献的关键残基。我们利用这一新的知识进行了两项应用。首先,我们测试了在两种人类含有 LisH 的蛋白质中发现的体细胞癌突变对抑制功能的影响。其次,我们验证了许多抑制结构域在植物中的功能,证实这些序列对于许多真核生物的合成生物学应用应该是有用的。