Leydon Alexander R, Downing Benjamin, Solano Sanchez Janet, Loll-Krippleber Raphael, Belliveau Nathan M, Rodriguez-Mias Ricard A, Bauer Andrew J, Watson Isabella J, Bae Lena, Villén Judit, Brown Grant W, Nemhauser Jennifer L
Department of Biology, University of Washington, Seattle, WA, USA.
Department of Biochemistry and Donnelly Centre, University of Toronto, Toronto, ON, USA.
J Cell Biol. 2025 Feb 3;224(2). doi: 10.1083/jcb.202404103. Epub 2024 Dec 9.
The plant corepressor TPL is recruited to diverse chromatin contexts, yet its mechanism of repression remains unclear. Previously, we leveraged the fact that TPL retains its function in a synthetic transcriptional circuit in the yeast model Saccharomyces cerevisiae to localize repressive function to two distinct domains. Here, we employed two unbiased whole-genome approaches to map the physical and genetic interactions of TPL at a repressed locus. We identified SPT4, SPT5, and SPT6 as necessary for repression with SPT4 acting as a bridge connecting TPL to SPT5 and SPT6. We discovered the association of multiple additional constituents of the transcriptional preinitiation complex at TPL-repressed promoters, specifically those involved early in transcription initiation. These findings were validated in yeast and plants, including a novel method to analyze the conditional loss of function of essential genes in plants. Our findings support a model where TPL nucleates preassembly of the transcription activation machinery to facilitate the rapid onset of transcription once repression is relieved.
植物共抑制因子TPL被招募到多种染色质环境中,但其抑制机制仍不清楚。此前,我们利用TPL在酵母模型酿酒酵母的合成转录回路中保留其功能这一事实,将抑制功能定位到两个不同的结构域。在这里,我们采用了两种无偏差的全基因组方法来绘制TPL在一个受抑制位点的物理和遗传相互作用图谱。我们确定SPT4、SPT5和SPT6是抑制所必需的,其中SPT4作为连接TPL与SPT5和SPT6的桥梁。我们发现转录起始前复合物的多个其他成分在TPL抑制的启动子处存在关联,特别是那些在转录起始早期起作用的成分。这些发现在酵母和植物中得到了验证,包括一种分析植物中必需基因条件性功能丧失的新方法。我们的研究结果支持了一个模型,即TPL使转录激活机制预组装成核,以便在抑制解除后促进转录的快速起始。