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Neurodata Without Borders 生态系统用于神经生理数据科学。

The Neurodata Without Borders ecosystem for neurophysiological data science.

机构信息

Scientific Data Division, Lawrence Berkeley National Laboratory, Berkeley, United States.

Applied Mathematics and Computational Research Division, Lawrence Berkeley National Laboratory, Berkeley, United States.

出版信息

Elife. 2022 Oct 4;11:e78362. doi: 10.7554/eLife.78362.

Abstract

The neurophysiology of cells and tissues are monitored electrophysiologically and optically in diverse experiments and species, ranging from flies to humans. Understanding the brain requires integration of data across this diversity, and thus these data must be findable, accessible, interoperable, and reusable (FAIR). This requires a standard language for data and metadata that can coevolve with neuroscience. We describe design and implementation principles for a language for neurophysiology data. Our open-source software (Neurodata Without Borders, NWB) defines and modularizes the interdependent, yet separable, components of a data language. We demonstrate NWB's impact through unified description of neurophysiology data across diverse modalities and species. NWB exists in an ecosystem, which includes data management, analysis, visualization, and archive tools. Thus, the NWB data language enables reproduction, interchange, and reuse of diverse neurophysiology data. More broadly, the design principles of NWB are generally applicable to enhance discovery across biology through data FAIRness.

摘要

细胞和组织的神经生理学在从苍蝇到人类等各种实验和物种中进行电生理学和光学监测。要理解大脑,就需要整合跨越这种多样性的数据,因此这些数据必须是可发现、可访问、可互操作和可重复使用的(FAIR)。这需要一种能够与神经科学共同发展的数据和元数据标准语言。我们描述了一种神经生理学数据语言的设计和实现原则。我们的开源软件(Neurodata Without Borders,NWB)定义并模块化了数据语言中相互依赖但又可分离的组件。我们通过跨多种模态和物种对神经生理学数据进行统一描述,展示了 NWB 的影响。NWB 存在于一个生态系统中,其中包括数据管理、分析、可视化和存档工具。因此,NWB 数据语言能够实现各种神经生理学数据的重现、交换和再利用。更广泛地说,NWB 的设计原则通常适用于通过数据的 FAIR 性来增强生物学中的发现。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1278/9531949/789da468feb6/elife-78362-fig1.jpg

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