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基于网络药理学探讨秋水仙碱治疗急性脑梗死的作用机制。

To discuss the mechanism of colchicine in the treatment of acute cerebral infarction based on network pharmacology.

机构信息

Department of Geriatrics, the Affiliated Hospital of Medical School of Ningbo University, Institute of Geriatrics of Ningbo University, Ningbo, China.

出版信息

Medicine (Baltimore). 2022 Sep 23;101(38):e30720. doi: 10.1097/MD.0000000000030720.

Abstract

To explore the mechanism of action of colchicine in the treatment of acute cerebral infarction (ACI) based on network pharmacology. The Swiss Target Prediction Database and CTD database were used to predict the target information of colchicine. ACI-related targets were retrieved using the GeneCards database, and the target protein interaction network (PPI) and active ingredient-target network were obtained by combining Cytoscape 3.7.1 software and R language. Kyoto Encyclopedia of Genes and Genomes pathway enrichment analysis and gene function analysis (GO) enrichment analysis were performed using R language to preliminarily explore the multiple pharmacological mechanisms of action of colchicine. There were 200 targets identified by network parameter analysis; 958 ACI targets were identified. Overlapping comparisons allowed the extraction of 143 overlapping targets, and the top 30 targets were screened according to the topological isomerization parameters. Component-target networks were constructed. A PPI of overlapping targets was established to identify key targets. In addition, Kyoto Encyclopedia of Genes and Genomes pathway enrichment analysis and GO functional enrichment analysis were performed to explore the multiple mechanisms of action of colchicine in the treatment of ACI. Colchicine treatment of ACI is characterized by multi-component, multi-target and multi-pathway, and can exert complex network regulation through the interaction between different targets, providing a new idea and new basis for further exploration of the mechanism of action of colchicine in the treatment of ACI.

摘要

基于网络药理学探究秋水仙碱治疗急性脑梗死(ACI)的作用机制。利用瑞士靶标预测数据库和 CTD 数据库预测秋水仙碱的靶标信息。通过 GeneCards 数据库检索 ACI 相关靶标,结合 Cytoscape 3.7.1 软件和 R 语言获取靶标蛋白相互作用网络(PPI)和活性成分-靶标网络。利用 R 语言进行京都基因与基因组百科全书(KEGG)通路富集分析和基因功能分析(GO)富集分析,初步探讨秋水仙碱的多药理作用机制。通过网络参数分析确定了 200 个靶标;鉴定出 958 个 ACI 靶标。通过重叠比较提取出 143 个重叠靶标,根据拓扑异构参数筛选出前 30 个靶标。构建成分-靶标网络。建立重叠靶标的 PPI,以鉴定关键靶标。此外,进行 KEGG 通路富集分析和 GO 功能富集分析,以探讨秋水仙碱治疗 ACI 的多种作用机制。秋水仙碱治疗 ACI 的特点是多成分、多靶标和多途径,可通过不同靶标之间的相互作用发挥复杂的网络调节作用,为进一步探究秋水仙碱治疗 ACI 的作用机制提供了新的思路和依据。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9410/9509177/7737a8272f4f/medi-101-e30720-g001.jpg

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