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丝切蛋白-膜相互作用:磷酸肌醇脂质结合中的静电效应

Cofilin-Membrane Interactions: Electrostatic Effects in Phosphoinositide Lipid Binding.

作者信息

Prakash Shikha, Krishna Anjali, Sengupta Durba

机构信息

CSIR - National Chemical Laboratory, Dr. Homi Bhabha Road, Pune, 411008, India.

Current Address: School of Biological Sciences, University of Auckland, Auckland, 1010, New Zealand.

出版信息

Chemphyschem. 2023 Feb 1;24(3):e202200509. doi: 10.1002/cphc.202200509. Epub 2022 Nov 4.

Abstract

The actin cytoskeleton interacts with the cell membrane primarily through the indirect interactions of actin-binding proteins such as cofilin-1. The molecular mechanisms underlying the specific interactions of cofilin-1 with membrane lipids are still unclear. Here, we performed coarse-grain molecular dynamics simulations of cofilin-1 with complex lipid bilayers to analyze the specificity of protein-lipid interactions. We observed the maximal interactions with phosphoinositide (PIP) lipids, especially PIP and PIP lipids. A good match was observed between the residues predicted to interact and previous experimental studies. The clustering of PIP lipids around the membrane bound protein leads to an overall lipid demixing and gives rise to persistent membrane curvature. Further, through a series of control simulations, we observe that both electrostatics and geometry are critical for specificity of lipid binding. Our current study is a step towards understanding the physico-chemical basis of cofilin-PIP lipid interactions.

摘要

肌动蛋白细胞骨架主要通过诸如cofilin-1等肌动蛋白结合蛋白的间接相互作用与细胞膜相互作用。cofilin-1与膜脂特异性相互作用的分子机制仍不清楚。在此,我们对cofilin-1与复合脂质双层进行了粗粒度分子动力学模拟,以分析蛋白质-脂质相互作用的特异性。我们观察到与磷酸肌醇(PIP)脂质,尤其是PI(4,5)P₂和PI(3,4,5)P₃脂质的最大相互作用。在预测相互作用的残基与先前的实验研究之间观察到了良好的匹配。膜结合蛋白周围PIP脂质的聚集导致整体脂质分离,并产生持续的膜曲率。此外,通过一系列对照模拟,我们观察到静电和几何形状对于脂质结合的特异性都至关重要。我们目前的研究是朝着理解cofilin与PIP脂质相互作用的物理化学基础迈出的一步。

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