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四个冬小麦品种在旗叶完全展开生长阶段的四个根际区室（大土壤、根际、根表和内生菌根）中的微生物多样性

Microbial Diversity in Four Rhizocompartments (Bulk Soil, Rhizosphere, Rhizoplane, and Endosphere) of Four Winter Wheat Varieties at the Fully Emerged Flag Leaf Growth Stage.

作者信息

Ahmad Jabeen, Zervas Athanasios, Ellegaard-Jensen Lea, Hennessy Rosanna C, Carbone Ignazio, Cornish Vicki, Müller-Stöver Dorette Sophie, Grunden Amy, Jacobsen Carsten S, Nicolaisen Mette Haubjerg

机构信息

Department of Plant and Microbial Biology, North Carolina State University, Raleigh, North Carolina, USA.

Department of Environmental Science, Aarhus University, Aarhus, Denmark.

出版信息

Microbiol Resour Announc. 2022 Nov 17;11(11):e0066322. doi: 10.1128/mra.00663-22. Epub 2022 Oct 6.

DOI:10.1128/mra.00663-22
PMID:36200901
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9671014/
Abstract

Community composition and recruitment are important elements of plant-microbe interactions and may provide insights for plant development and resilience. The results of 16S rRNA amplicon sequencing from four rhizocompartments for four wheat cultivars grown under controlled conditions and sampled after flag leaf emergence are provided. Data demonstrate differences in microbial communities according to rhizocompartment.

摘要

群落组成和补充是植物与微生物相互作用的重要元素，可能为植物发育和恢复力提供见解。本文提供了在可控条件下种植的四个小麦品种在旗叶出现后从四个根际区室进行16S rRNA扩增子测序的结果。数据表明，根据根际区室不同，微生物群落存在差异。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/82cb/9671014/1a34508fa71f/mra.00663-22-f001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/82cb/9671014/1a34508fa71f/mra.00663-22-f001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/82cb/9671014/1a34508fa71f/mra.00663-22-f001.jpg

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本文引用的文献

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Defining the wheat microbiome: Towards microbiome-facilitated crop production.定义小麦微生物组：迈向微生物组促进的作物生产。
Comput Struct Biotechnol J. 2021 Feb 9;19:1200-1213. doi: 10.1016/j.csbj.2021.01.045. eCollection 2021.
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Four decades of soil water stress history together with host genotype constrain the response of the wheat microbiome to soil moisture.四十年来的土壤水分胁迫史和宿主基因型共同限制了小麦微生物组对土壤水分的响应。
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Influence of plant genotype and soil on the wheat rhizosphere microbiome: evidences for a core microbiome across eight African and European soils.
植物基因型和土壤对小麦根际微生物组的影响：在八个非洲和欧洲土壤中存在核心微生物组的证据。
FEMS Microbiol Ecol. 2020 Jun 1;96(6). doi: 10.1093/femsec/fiaa067.
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Does plant-Microbe interaction confer stress tolerance in plants: A review?植物-微生物相互作用是否赋予了植物的抗逆性：综述？
Microbiol Res. 2018 Mar;207:41-52. doi: 10.1016/j.micres.2017.11.004. Epub 2017 Nov 9.
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Bioaugmentation of rapid sand filters by microbiome priming with a nitrifying consortium will optimize production of drinking water from groundwater.通过使用硝化生物群落进行微生物组启动来对快速砂滤器进行生物增强，将优化地下水生产饮用水的过程。
Water Res. 2018 Feb 1;129:1-10. doi: 10.1016/j.watres.2017.11.009. Epub 2017 Nov 6.
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DADA2: High-resolution sample inference from Illumina amplicon data.DADA2：从Illumina扩增子数据进行高分辨率样本推断。
Nat Methods. 2016 Jul;13(7):581-3. doi: 10.1038/nmeth.3869. Epub 2016 May 23.
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The SILVA and "All-species Living Tree Project (LTP)" taxonomic frameworks. SILVA 与“所有物种生命树项目（LTP）”分类学框架。
Nucleic Acids Res. 2014 Jan;42(Database issue):D643-8. doi: 10.1093/nar/gkt1209. Epub 2013 Nov 28.
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phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data.phyloseq：一个用于重现交互式分析和微生物组普查数据分析的图形的 R 包。
PLoS One. 2013 Apr 22;8(4):e61217. doi: 10.1371/journal.pone.0061217. Print 2013.
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The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. SILVA 核糖体 RNA 基因数据库项目：改进的数据处理和基于网络的工具。
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Diabetologia. 2012 Aug;55(8):2285-94. doi: 10.1007/s00125-012-2564-7. Epub 2012 May 10.