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利用二维荧光光谱法在不同条件下对 BSA 与 Fe 团簇相互作用的组分进行无监督识别。

Unsupervised recognition of components from the interaction of BSA with Fe cluster in different conditions utilizing 2D fluorescence spectroscopy.

机构信息

Department of Chemistry, Institute for Advanced Studies in Basic Sciences (IASBS), Zanjan, 45137-66731, Iran.

Center of Climate Change and Global Warming, Institute for Advanced Studies in Basic Sciences (IASBS), Zanjan, 45137-66731, Iran.

出版信息

Sci Rep. 2022 Oct 7;12(1):16875. doi: 10.1038/s41598-022-20768-6.

DOI:10.1038/s41598-022-20768-6
PMID:36207446
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9547014/
Abstract

The excitation-emission fluorescence spectroscopy combined with three-way analysis was applied for discriminating the pure BSA and BSA/FeO(OAc)ClO (Fe) using unsupervised classification methods. Herein, the interaction of bovine serum albumin (BSA) and Fe clusters as an artificial enzyme is studied by extracting the intrinsic excitation-emission (EEM) fluorescence of BSA. The conformation of BSA changes with pH, temperature, and Fe concentration. Three-way fluorescence data were recorded for BSA and BSA/Fe during different days. The obtained results showed that the Fe clusters cause changes in the structure of BSA conformation as a function of pH, temperature, and Fe concentration. Also, the denaturation pathway of the BSA molecule is significantly different in the presence of Fe clusters. Both techniques of PARAFAC and PCA were used in the excitation-emission fluorescence matrices (EEM) of solutions at three different pH (5.0, 7.0, and 9.0) and temperatures (15.0, 25.0, and 35.0 °C) values. Also, we reported the results of the change in concentrations of Fe (4.0, 6.0, and 8.0 mg) using these methods. These three amino acids (tyrosine, tryptophan, and phenylalanine) indicate all datasets and their similarities and differences. The spectral differences were more remarkable in different pH values compared to different temperatures. Also, we could distinguish between the groups of protein samples properly in different concentrations of Fe using low-cost EEM spectral images and PARAFAC.

摘要

采用激发-发射荧光光谱结合三向分析方法,应用无监督分类方法对纯 BSA 和 BSA/FeO(OAc)ClO(Fe)进行区分。本文通过提取牛血清白蛋白(BSA)的固有激发-发射(EEM)荧光,研究了牛血清白蛋白(BSA)与 Fe 簇作为人工酶的相互作用。BSA 的构象随 pH 值、温度和 Fe 浓度而变化。记录了不同天数下 BSA 和 BSA/Fe 的三向荧光数据。结果表明,Fe 簇会导致 BSA 构象的结构发生变化,这是 pH 值、温度和 Fe 浓度的函数。此外,在存在 Fe 簇的情况下,BSA 分子的变性途径明显不同。PARAFAC 和 PCA 两种技术均用于三个不同 pH 值(5.0、7.0 和 9.0)和温度(15.0、25.0 和 35.0°C)值的溶液的激发-发射荧光矩阵(EEM)中。此外,我们还报告了使用这些方法改变 Fe 浓度(4.0、6.0 和 8.0 mg)的结果。这三种氨基酸(酪氨酸、色氨酸和苯丙氨酸)表明了所有数据集及其相似性和差异性。与不同温度相比,不同 pH 值下的光谱差异更为显著。此外,我们可以使用低成本的 EEM 光谱图像和 PARAFAC 来区分不同 Fe 浓度下的蛋白质样本组。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7417/9547014/040c16ca25c9/41598_2022_20768_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7417/9547014/ae18cadf2470/41598_2022_20768_Fig1_HTML.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7417/9547014/9f16c1f02c46/41598_2022_20768_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7417/9547014/79dfcb0b519d/41598_2022_20768_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7417/9547014/040c16ca25c9/41598_2022_20768_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7417/9547014/ae18cadf2470/41598_2022_20768_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7417/9547014/4ab98e2a37d8/41598_2022_20768_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7417/9547014/f018f432f4e6/41598_2022_20768_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7417/9547014/b74ec268193e/41598_2022_20768_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7417/9547014/9f16c1f02c46/41598_2022_20768_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7417/9547014/79dfcb0b519d/41598_2022_20768_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7417/9547014/040c16ca25c9/41598_2022_20768_Fig7_HTML.jpg

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