Institute for Biological Physics, University of Cologne, Zülpicherstr. 47a, 50674, Köln, Germany.
Center for Data and Simulation Science, University of Cologne, Köln, Germany.
ISME J. 2023 Jan;17(1):130-139. doi: 10.1038/s41396-022-01325-5. Epub 2022 Oct 12.
Bacterial transformation, a common mechanism of horizontal gene transfer, can speed up adaptive evolution. How its costs and benefits depend on the growth environment is poorly understood. Here, we characterize the distributions of fitness effects (DFE) of transformation in different conditions and test whether they predict in which condition transformation is beneficial. To determine the DFEs, we generate hybrid libraries between the recipient Bacillus subtilis and different donor species and measure the selection coefficient of each hybrid strain. In complex medium, the donor Bacillus vallismortis confers larger fitness effects than the more closely related donor Bacillus spizizenii. For both donors, the DFEs show strong effect beneficial transfers, indicating potential for fast adaptive evolution. While some transfers of B. vallismortis DNA show pleiotropic effects, various transfers are beneficial only under a single growth condition, indicating that the recipient can benefit from a variety of donor genes to adapt to varying growth conditions. We scrutinize the predictive value of the DFEs by laboratory evolution under different growth conditions and show that the DFEs correctly predict the condition at which transformation confers a benefit. We conclude that transformation has a strong potential for speeding up adaptation to varying environments by profiting from a gene pool shared between closely related species.
细菌转化是一种常见的水平基因转移机制,可以加速适应性进化。但其成本和收益如何取决于生长环境,这一点我们知之甚少。在这里,我们描述了不同条件下转化的适应度效应(DFE)分布,并测试了它们是否可以预测转化在何种条件下是有益的。为了确定 DFE,我们在受体枯草芽孢杆菌和不同供体物种之间生成杂交文库,并测量每个杂交菌株的选择系数。在复杂培养基中,供体鲍氏不动杆菌比亲缘关系更近的供体芽孢杆菌 spizizenii 赋予更大的适应度效应。对于这两种供体,DFE 显示出强烈的有利转移效应,表明具有快速适应性进化的潜力。虽然鲍氏不动杆菌 DNA 的一些转移显示出多效性效应,但各种转移仅在单一生长条件下是有利的,这表明受体可以从各种供体基因中受益,以适应不同的生长条件。我们通过在不同生长条件下进行实验室进化来仔细研究 DFE 的预测价值,并表明 DFE 可以正确预测转化带来益处的条件。我们得出结论,转化通过利用亲缘关系密切的物种之间共享的基因库,具有加速适应不断变化的环境的强大潜力。