Thoracic Surgery Jiangyin Hospital Affiliated to Nanjing University of Chinese Medicine, Jiangsu, China.
Comput Math Methods Med. 2022 Sep 30;2022:7116080. doi: 10.1155/2022/7116080. eCollection 2022.
Small cell lung cancer (SCLC) is a highly invasive and fatal malignancy. Research at the present stage implied that the expression of immune-related genes is associated with the prognosis in SCLC. Accordingly, it is essential to explore effective immune-related molecular markers to judge prognosis and treat SCLC. Our research obtained SCLC dataset from Gene Expression Omnibus (GEO) and subjected mRNAs in it to differential expression analysis. Differentially expressed mRNAs (DEmRNAs) were intersected with immune-related genes to yield immune-related differentially expressed genes (DEGs). The functions of these DEGs were revealed by Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses. Thereafter, we categorized 3 subtypes of immune-related DEGs via K-means clustering. Kaplan-Meier curves analyzed the effects of 3 subtypes on SCLC patients' survival. Single-sample gene set enrichment analysis (ssGSEA) and ESTIMATE validated that the activation of different immune gene subtypes differed significantly. Finally, an immune-related-7-gene assessment model was constructed by univariate-Lasso-multiple Cox regression analyses. Riskscores, Kaplan-Meier curves, receiver operating characteristic (ROC) curves, and independent prognostic analyses validated the prognostic value of the immune-related-7-gene assessment model. As suggested by GSEA, there was a prominent difference in cytokine-related pathways between high- and low-risk groups. As the analysis went further, we discovered a statistically significant difference in the expression of human leukocyte antigen (HLA) proteins and costimulatory molecules expressed on the surface of CD274, CD152, and T lymphocytes in different groups. In a word, we started with immune-related genes to construct the prognostic model for SCLC, which could effectively evaluate the clinical outcomes and offer guidance for the treatment and prognosis of SCLC patients.
小细胞肺癌(SCLC)是一种高度侵袭性和致命性的恶性肿瘤。现阶段的研究表明,免疫相关基因的表达与 SCLC 的预后相关。因此,探索有效的免疫相关分子标志物来判断 SCLC 的预后和治疗至关重要。我们的研究从基因表达综合数据库(GEO)中获取 SCLC 数据集,并对其中的 mRNAs 进行差异表达分析。将差异表达的 mRNAs(DEmRNAs)与免疫相关基因进行交集,得到免疫相关差异表达基因(DEGs)。通过基因本体论(GO)和京都基因与基因组百科全书(KEGG)富集分析揭示这些 DEGs 的功能。然后,我们通过 K-均值聚类对 3 种免疫相关 DEG 亚型进行分类。Kaplan-Meier 曲线分析 3 种亚型对 SCLC 患者生存的影响。单样本基因集富集分析(ssGSEA)和 ESTIMATE 验证了不同免疫基因亚型的激活差异显著。最后,通过单变量 Lasso-多元 Cox 回归分析构建了一个免疫相关 7 基因评估模型。风险评分、Kaplan-Meier 曲线、接收者操作特征(ROC)曲线和独立预后分析验证了免疫相关 7 基因评估模型的预后价值。正如 GSEA 所表明的,高风险组和低风险组之间在细胞因子相关通路方面存在显著差异。随着分析的深入,我们发现不同组之间 HLA 蛋白的表达以及 CD274、CD152 和 T 淋巴细胞表面表达的共刺激分子的表达存在统计学差异。总之,我们从免疫相关基因入手,构建了 SCLC 的预后模型,能够有效地评估临床结局,为 SCLC 患者的治疗和预后提供指导。