Raza Muhammad Asam, Farwa Umme, Ain Nida Qurat Ul, Ishaque Fatima, Yaseen Muhammad, Naveed Muhammad, Shabbir Muhammad Aqib
Department of Chemistry Hafiz Hayat Campus University of Gujrat Gujrat Pakistan.
Department of Chemistry Division of Science and Technology University of Education Lahore Pakistan.
ChemistrySelect. 2022 Sep 27;7(36):e202201793. doi: 10.1002/slct.202201793. Epub 2022 Sep 22.
studies in terms of density functional theory (DFT), molecular docking, and ADMET (absorption, distribution, metabolism, excretion and toxicity) were performed for 55 thiazolidinones compounds derived from different amines and aldehydes. DFT is a computational quantum mechanical modeling method used to predict the various properties of the compounds. Different parameters such as Electronegativity (x), Chemical Hardness (ŋ), Chemical Potential (μ), Ionization potential (IP), and Electron Affinity (EA), etc. were calculated by Koopmans theorem. The compounds were docked with Molecular Operating Environment (MOE) software using already reported PDB files of BChE, AChE, and α-glucosidase. To analyze the Spike Glycoprotein of SARS-Cov-2 and heterocyclic compounds, molecular interactions study was carried out between Spike Glycoprotein of SARS-Cov-2 (6VXX) and 55 synthetic heterocyclic compounds. It was performed by the utilization of PyRx Virtual Screening Tool and AutoDock Vina based virtual environment was used in PyRx. Maximum binding affinity was observed with compound which was -8.7 kcal/mol and then with which was -8.5 respectively. In the case of the AChE enzyme, has a maximum docking score of -12.9027 kcal/mol while depicted the maximum score for the BChE enzyme with a value of -8.6971 kcal/mol. The docking studies revealed that compound has maximum binding capacity toward glucosidase (-14.8735 kcal/mol). ADMET properties of under consideration compounds were determined by Swiss online-based software which concluded that these molecules have a drug-like properties and having no violation.
针对55种由不同胺类和醛类衍生而来的噻唑烷二酮类化合物,开展了密度泛函理论(DFT)、分子对接以及ADMET(吸收、分布、代谢、排泄和毒性)方面的研究。DFT是一种用于预测化合物各种性质的计算量子力学建模方法。通过库普曼斯定理计算了不同参数,如电负性(x)、化学硬度(ŋ)、化学势(μ)、电离势(IP)和电子亲和势(EA)等。使用已报道的丁酰胆碱酯酶(BChE)、乙酰胆碱酯酶(AChE)和α-葡萄糖苷酶的蛋白质数据银行(PDB)文件,通过分子操作环境(MOE)软件对这些化合物进行对接。为了分析严重急性呼吸综合征冠状病毒2(SARS-CoV-2)的刺突糖蛋白与杂环化合物,在SARS-CoV-2的刺突糖蛋白(6VXX)和55种合成杂环化合物之间进行了分子相互作用研究。这是通过使用PyRx虚拟筛选工具进行的,并且在PyRx中使用了基于AutoDock Vina的虚拟环境。观察到化合物的最大结合亲和力为-8.7 kcal/mol,其次是化合物,其结合亲和力为-8.5 kcal/mol。在AChE酶的情况下,化合物的最大对接分数为-12.9027 kcal/mol,而化合物对BChE酶的最大对接分数为-8.6971 kcal/mol。对接研究表明,化合物对葡萄糖苷酶具有最大结合能力(-14.8735 kcal/mol)。所考虑化合物的ADMET性质通过基于瑞士在线的软件确定,该软件得出结论,这些分子具有类药物性质且无违规情况。