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通过分子对接P53、半胱天冬酶、细胞周期蛋白D1诱导凋亡、细胞毒性分析以及三吲哚啉1、3和4的吞噬活性评估抗癌效力

Anti-cancer potency by induced apoptosis by molecular docking P53, caspase, cyclin D1, cytotoxicity analysis and phagocytosis activity of trisindoline 1,3 and 4.

作者信息

Nurhayati Awik Puji Dyah, Rihandoko Andis, Fadlan Arif, Ghaissani Shabrina Syifa, Jadid Nurul, Setiawan Edwin

机构信息

Department of Biology, Faculty of Science and Data Analytics, Institut Teknologi Sepuluh Nopember, Surabaya, Indonesia.

Department of Chemistry, Faculty of Science and Data Analytics, Institut Teknologi Sepuluh Nopember, Indonesia.

出版信息

Saudi Pharm J. 2022 Sep;30(9):1345-1359. doi: 10.1016/j.jsps.2022.06.012. Epub 2022 Jun 21.

DOI:10.1016/j.jsps.2022.06.012
PMID:36249936
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9563049/
Abstract

Cancer is one of the leading causes of death in the world. Efforts to find and develop cancer drugs from natural products continue with the exploration of trisindoline, a substance that is isolated from marine sponges . Trisindoline is an indole trimer alkaloid compound that has been successfully synthesized into trisindoline 1, 3 and 4. Trisindoline is cytotoxic in cell lines and in this study, trisindoline was able to induce apoptosis in the in silico and in vitro tests that were carried out. The in silico test was carried out through molecular docking using the Autodock Vina method and the Molecular Dynamics (MD) Simulation QM / MM AMBER. The target proteins used were protein p53 and caspase -9 which played a role in the apoptotic pathway and cyclin D1 which played a role in cell proliferation. Meanwhile, cytotoxicity analysis was carried out using the MTT method (3- (4,5-dimethyltiazol -2-yl) -2,5 -dipenyl tetrazolium bromide). Nevertheless, the ability of trisindoline to induce phagocytosis is still unrevealed. The phagocytosis assay was carried out by assessing the macrophage capacity and phagocytic index using the latex-beads model. The in silico results showed that the binding affinity values between the target protein Cdk-2 and the trisindoline 1, trisindoline 3 and trisindoline 4 ligands were -7.3 kcal / mol, -7.7 kcal / mol and -6.6 kcal / mol respectively. The binding affinity values between the target protein p53 and the trisindoline 1, trisindoline 3 and trisindoline 4 ligands were -7.5 kcal / mol, -7.4 kcal / mol and -7.5 kcal / mol respectively. The binding affinity values between the target protein caspase-9 and the trisindoline 1, trisindoline 3 and trisindoline 4 ligands were -7.5 kcal / mol, -7.1 kcal / mol and -7.2 kcal / mol respectively. The results of RMSD (Root Mean Square Deviation), RMSF (Root Mean Square Fluctuation), and hydrogen bonds in the MD (Molecular Dynamics) Simulation showed that Cdk-2 formed a protein complex with trisindoline 3, protein p53 with trisindoline 1 and caspase-9 with trisindoline 1. The cytotoxicity assay was carried out in the MCF-7 cell line and the IC50 value obtained for trisindoline 1 was 2.059 μM, for trisindoline 3 was 3.9759 ​​μM, for trisindoline 4 was 15.46 μM and for doxorubicin was 9.88 μM. Furthermore, the phagocytosis test was carried out using trisindoline 1, 3 and 4. Our results showed that 6.25 µg mL of trisindoline 1 and trisindoline 3 were able to induce the phagocytosis capacity of macrophage cells of 38.34; whereas trisindoline 4 at a concentration of 50 µg mL induces a phagocytosis capacity of 32.89. Trisindoline 1, 3 and 4 showed potentials of immunostimulants at low concentrations but showed potentials of immunosuppressants at high concentrations. The overall results demonstrated that trisindoline 1 and 3 are potential anti-cancer candidates capable of activating the apoptotic pathway.

摘要

癌症是全球主要死因之一。从天然产物中寻找和开发抗癌药物的工作仍在继续,人们对从海洋海绵中分离出的三吲哚啉进行了探索。三吲哚啉是一种吲哚三聚体生物碱化合物,已成功合成三吲哚啉1、3和4。三吲哚啉在细胞系中具有细胞毒性,在本研究中,三吲哚啉在进行的计算机模拟和体外试验中能够诱导细胞凋亡。计算机模拟试验通过使用自动对接Vina方法和分子动力学(MD)模拟QM/MM AMBER进行分子对接来开展。所使用的靶蛋白是在凋亡途径中起作用的蛋白p53和半胱天冬酶-9,以及在细胞增殖中起作用的细胞周期蛋白D1。同时,使用MTT法(3-(4,5-二甲基噻唑-2-基)-2,5-二苯基溴化四氮唑)进行细胞毒性分析。然而,三吲哚啉诱导吞噬作用的能力仍未明确。吞噬作用测定通过使用乳胶珠模型评估巨噬细胞能力和吞噬指数来进行。计算机模拟结果表明,靶蛋白细胞周期蛋白依赖性激酶-2(Cdk-2)与三吲哚啉1、三吲哚啉3和三吲哚啉4配体之间的结合亲和力值分别为-7.3千卡/摩尔、-7.7千卡/摩尔和-6.6千卡/摩尔。靶蛋白p53与三吲哚啉1、三吲哚啉3和三吲哚啉4配体之间的结合亲和力值分别为-7.5千卡/摩尔、-7.4千卡/摩尔和-7.5千卡/摩尔。靶蛋白半胱天冬酶-9与三吲哚啉1、三吲哚啉3和三吲哚啉4配体之间的结合亲和力值分别为-7.5千卡/摩尔、-7.1千卡/摩尔和-7.2千卡/摩尔。分子动力学(MD)模拟中的均方根偏差(RMSD)、均方根波动(RMSF)和氢键结果表明,Cdk-2与三吲哚啉3形成蛋白复合物,蛋白p53与三吲哚啉1形成复合物,半胱天冬酶-9与三吲哚啉1形成复合物。细胞毒性测定在MCF-7细胞系中进行,三吲哚啉1的半数抑制浓度(IC50)值为2.059微摩尔,三吲哚啉3为3.9759微摩尔,三吲哚啉4为15.46微摩尔,阿霉素为9.88微摩尔。此外,使用三吲哚啉1、3和4进行吞噬作用试验。我们的结果表明,6.25微克/毫升的三吲哚啉1和三吲哚啉3能够诱导巨噬细胞的吞噬能力达到38.34;而浓度为50微克/毫升的三吲哚啉4诱导的吞噬能力为32.89。三吲哚啉1、3和4在低浓度时显示出免疫刺激剂的潜力,但在高浓度时显示出免疫抑制剂的潜力。总体结果表明,三吲哚啉1和3是能够激活凋亡途径的潜在抗癌候选物。

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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ec38/9563049/0fba0874b904/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ec38/9563049/619f8725bce9/fx1.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ec38/9563049/56ed3c3d6ff3/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ec38/9563049/178f07f11b03/gr6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ec38/9563049/ec45862b1e9b/gr7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ec38/9563049/3a125d57f50d/gr8.jpg
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