Australian Centre for Water and Environmental Biotechnology, Faculty of Engineering, Architecture and Information Technology, The University of Queensland, St Lucia, QLD, Australia.
Centre for Microbiome Research, School of Biomedical Sciences, Queensland University of Technology (QUT), Translational Research Institute, Woolloongabba, QLD, Australia.
Nat Commun. 2022 Oct 17;13(1):6115. doi: 10.1038/s41467-022-33872-y.
Anaerobic microorganisms are thought to play a critical role in regulating the flux of short-chain gaseous alkanes (SCGAs; including ethane, propane and butane) from terrestrial and aquatic ecosystems to the atmosphere. Sulfate has been confirmed to act as electron acceptor supporting microbial anaerobic oxidation of SCGAs, yet several other energetically more favourable acceptors co-exist with these gases in anaerobic environments. Here, we show that a bioreactor seeded with biomass from a wastewater treatment facility can perform anaerobic propane oxidation coupled to nitrate reduction to dinitrogen gas and ammonium. The bioreactor was operated for more than 1000 days, and we used C- and N-labelling experiments, metagenomic, metatranscriptomic, metaproteomic and metabolite analyses to characterize the microbial community and the metabolic processes. The data collectively suggest that a species representing a novel order within the bacterial class Symbiobacteriia is responsible for the observed nitrate-dependent propane oxidation. The closed genome of this organism, which we designate as 'Candidatus Alkanivorans nitratireducens', encodes pathways for oxidation of propane to CO via fumarate addition, and for nitrate reduction, with all the key genes expressed during nitrate-dependent propane oxidation. Our results suggest that nitrate is a relevant electron sink for SCGA oxidation in anaerobic environments, constituting a new microbially-mediated link between the carbon and nitrogen cycles.
厌氧微生物被认为在调节陆地和水生生态系统中短链气态烷烃(包括乙烷、丙烷和丁烷)向大气中的通量方面起着关键作用。已经证实硫酸盐可以作为支持微生物厌氧氧化 SCGA 的电子受体,但在厌氧环境中,还有其他几种能量更有利的受体与这些气体共存。在这里,我们表明,一个用废水处理厂生物质接种的生物反应器可以进行厌氧丙烷氧化,同时将硝酸盐还原为氮气和铵。该生物反应器运行了 1000 多天,我们使用 C 和 N 标记实验、宏基因组学、宏转录组学、宏蛋白质组学和代谢物分析来表征微生物群落和代谢过程。这些数据共同表明,一种代表细菌类 Symbiobacteriia 中新目内的物种负责观察到的硝酸盐依赖型丙烷氧化。该生物的闭合基因组,我们将其命名为“Candidatus Alkanivorans nitratireducens”,编码了通过添加富马酸盐将丙烷氧化为 CO 的途径,以及硝酸盐还原途径,所有关键基因在硝酸盐依赖型丙烷氧化过程中表达。我们的结果表明,硝酸盐是厌氧环境中 SCGA 氧化的一个相关电子汇,构成了碳氮循环之间新的微生物介导联系。