Thauer Rudolf K, Shima Seigo
Max Planck Institute for Terrestrial Microbiology, Karl-von-Frisch-Strasse, D-35043 Marburg, Germany.
Ann N Y Acad Sci. 2008 Mar;1125:158-70. doi: 10.1196/annals.1419.000. Epub 2007 Dec 20.
Methane has long been known to be used as a carbon and energy source by some aerobic alpha- and delta-proteobacteria. In these organisms the metabolism of methane starts with its oxidation with O(2) to methanol, a reaction catalyzed by a monooxygenase and therefore restricted to the aerobic world. Methane has recently been shown to also fuel the growth of anaerobic microorganisms. The oxidation of methane with sulfate and with nitrate have been reported, but the mechanisms of anaerobic methane oxidation still remains elusive. Sulfate-dependent methane oxidation is catalyzed by methanotrophic archaea, which are related to the Methanosarcinales and which grow in close association with sulfate-reducing delta-proteobacteria. There is evidence that anaerobic methane oxidation with sulfate proceeds at least in part via reversed methanogenesis involving the nickel enzyme methyl-coenzyme M reductase for methane activation, which under standard conditions is an endergonic reaction, and thus inherently slow. Methane oxidation coupled to denitrification is mediated by bacteria belonging to a novel phylum and does not involve methyl-coenzyme M reductase. The first step in methane oxidation is most likely the exergonic formation of 2-methylsuccinate from fumarate and methane catalyzed by a glycine-radical enzyme.
长期以来,人们一直知道一些好氧的α-和δ-变形菌会将甲烷用作碳源和能源。在这些生物体中,甲烷的代谢始于其与O(2)氧化生成甲醇,该反应由单加氧酶催化,因此仅限于好氧环境。最近有研究表明,甲烷也能为厌氧微生物的生长提供能量。已报道了甲烷与硫酸盐和硝酸盐的氧化反应,但厌氧甲烷氧化的机制仍然难以捉摸。依赖硫酸盐的甲烷氧化由与甲烷八叠球菌目相关的甲烷营养古菌催化,这些古菌与硫酸盐还原δ-变形菌密切共生。有证据表明,与硫酸盐的厌氧甲烷氧化至少部分通过逆向产甲烷作用进行,该过程涉及用于甲烷活化的镍酶甲基辅酶M还原酶,在标准条件下这是一个吸能反应,因此本质上较慢。与反硝化作用耦合的甲烷氧化由属于一个新门的细菌介导,且不涉及甲基辅酶M还原酶。甲烷氧化的第一步很可能是由一种甘氨酸自由基酶催化,从富马酸盐和甲烷中以放能方式生成2-甲基琥珀酸。