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新型糖精类似物作为有前景的抗菌和抗癌剂:合成、密度泛函理论、多面体寡聚倍半硅氧烷分析、分子对接、分子动力学模拟及细胞实验

Novel saccharin analogs as promising antibacterial and anticancer agents: synthesis, DFT, POM analysis, molecular docking, molecular dynamic simulations, and cell-based assay.

作者信息

Abdellattif Magda H, Elkamhawy Ahmed, Hagar Mohamed, Hadda Taibi Ben, Shehab Wesam S, Mansy Wael, Belal Amany, Arief M M H, Hussien Mostafa A

机构信息

Department of Chemistry, College of Science, Taif University, Taif, Saudi Arabia.

College of Pharmacy, Dongguk University-Seoul, Goyang, South Korea.

出版信息

Front Pharmacol. 2022 Oct 4;13:958379. doi: 10.3389/fphar.2022.958379. eCollection 2022.

Abstract

Saccharine is a pharmacologically significant active scaffold for various biological activities, including antibacterial and anticancer activities. Herein, saccharinyl hydrazide () was synthesized and converted into 2-[(2Z)-2-(1,1-dioxo-1,2-dihydro-3H-1λ,2- benzothiazole-3-ylidene) hydrazinyl] acetohydrazide (), which was employed as a key precursor for synthesizing a novel series of small molecules bearing different moieties of monosaccharides, aldehydes, and anhydrides. Potent biological activities were found against and , and the results indicated that compounds and were the most active analogs with an inhibition zone diameter of 30-35 mm In cell-based anticancer assay over Ovcar-3 and M-14 cell lines, compound was the most potent analog with IC values of 7.64 ± 0.01 and 8.66 ± 0.01 µM, respectively. The Petra Orisis Molinspiration (POM) theoretical method was used to calculate the drug score of tested compounds and compare them with their experimental screening data. Theoretical DFT calculations were carried out in a gas phase in a set of B3LYP 6-311G (d,p). Molecular docking studies utilizing the MOE indicated the best binding mode with the highest energy interaction within the binding sites. The molecular docking for Ovcar-3 was carried out on the ovarian cancer protein (3W2S), while the molecular docking for M-14 melanoma was carried out on the melanoma cancer protein (2OPZ). The MD performed about 2ns simulations to validate selected compounds' theoretical studies.

摘要

糖精是一种具有药理学意义的活性支架,具有多种生物活性,包括抗菌和抗癌活性。在此,合成了糖精酰肼(),并将其转化为2-[(2Z)-2-(1,1-二氧代-1,2-二氢-3H-1λ,2-苯并噻唑-3-亚基)肼基]乙酰肼(),该化合物被用作合成一系列带有不同单糖、醛和酸酐部分的新型小分子的关键前体。发现对和具有较强的生物活性,结果表明化合物和是活性最高的类似物,抑菌圈直径为30 - 35毫米。在针对Ovcar-3和M-14细胞系的基于细胞的抗癌试验中,化合物是最有效的类似物,IC值分别为7.64±0.01和8.66±0.01微摩尔。使用Petra Orisis Molinspiration(POM)理论方法计算测试化合物的药物评分,并将其与实验筛选数据进行比较。理论DFT计算在气相中于一组B3LYP 6-311G(d,p)水平上进行。利用MOE进行的分子对接研究表明,在结合位点内具有最高能量相互作用的最佳结合模式。针对Ovcar-3的分子对接是在卵巢癌蛋白(3W2S)上进行的,而针对M-14黑色素瘤的分子对接是在黑色素瘤癌蛋白(2OPZ)上进行的。分子动力学模拟进行了约2纳秒的模拟,以验证所选化合物的理论研究。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cdf0/9577234/54015d6431e2/FPHAR_fphar-2022-958379_wc_sch1.jpg

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