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基于高通量测序的子宫内膜异位症患者在位和异位子宫内膜基质细胞的转录组分析

Transcriptome Profiling of Eutopic and Ectopic Endometrial Stromal Cells in Women with Endometriosis Based on High-Throughput Sequencing.

作者信息

Chen Chih-Chieh, Chou Yung-Che, Hsu Chia-Yi, Tsai Eing-Mei, Er Tze-Kiong

机构信息

Institute of Medical Science and Technology, National Sun Yat-sen University, Kaohsiung 804, Taiwan.

Division of Laboratory Medicine, Asia University Hospital, Asia University, Taichung 413, Taiwan.

出版信息

Biomedicines. 2022 Sep 29;10(10):2432. doi: 10.3390/biomedicines10102432.

DOI:10.3390/biomedicines10102432
PMID:36289693
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9598494/
Abstract

Endometriosis is a common gynecological disease that affects approximately 5-10% of reproductive-aged women. However, the etiology and pathophysiology of endometriosis are currently unclear. The objective of this study was to identify a potential pathogenic gene of endometriosis using RNA sequencing (RNA-seq) analysis. Human endometrial stromal cells were isolated from four patients receiving surgical treatment for endometriosis during laparoscopic surgery, and RNA-seq was used to examine differentially expressed genes (DEGs) in eutopic and ectopic endometrial stromal cells. The functional significance of the differentially expressed genes was analyzed using Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses. A total of 1309 upregulated and 663 downregulated genes were identified through the analysis of the transcriptomes of eutopic and ectopic endometrial stromal cells. Furthermore, KEGG analysis indicated that these DEGs were mainly enriched in the PI3K-Akt signaling pathway, cytokine-cytokine receptor interaction, and MAPK signaling pathway. Our study identified differential gene expression in eutopic as compared to ectopic endometrial tissue stromal cells. We strongly believe that our findings can bring new insights into the underlying mechanisms of endometriosis. However, future research is necessary to clarify the roles of the identified genes.

摘要

子宫内膜异位症是一种常见的妇科疾病,影响着约5%-10%的育龄妇女。然而,子宫内膜异位症的病因和病理生理学目前尚不清楚。本研究的目的是通过RNA测序(RNA-seq)分析确定子宫内膜异位症的一个潜在致病基因。从四名接受腹腔镜手术治疗子宫内膜异位症的患者中分离出人子宫内膜基质细胞,并使用RNA-seq检测在位和异位子宫内膜基质细胞中的差异表达基因(DEG)。使用基因本体论(GO)和京都基因与基因组百科全书(KEGG)通路富集分析来分析差异表达基因的功能意义。通过对在位和异位子宫内膜基质细胞转录组的分析,共鉴定出1309个上调基因和663个下调基因。此外,KEGG分析表明,这些DEG主要富集在PI3K-Akt信号通路、细胞因子-细胞因子受体相互作用和MAPK信号通路中。我们的研究确定了在位子宫内膜组织基质细胞与异位子宫内膜组织基质细胞之间的差异基因表达。我们坚信,我们的发现能够为子宫内膜异位症的潜在机制带来新的见解。然而,有必要进行进一步的研究以阐明所鉴定基因的作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ca10/9598494/1101668f2606/biomedicines-10-02432-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ca10/9598494/51bf8c56b48f/biomedicines-10-02432-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ca10/9598494/e8b074a24870/biomedicines-10-02432-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ca10/9598494/5e61fb7a61f9/biomedicines-10-02432-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ca10/9598494/1101668f2606/biomedicines-10-02432-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ca10/9598494/51bf8c56b48f/biomedicines-10-02432-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ca10/9598494/e8b074a24870/biomedicines-10-02432-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ca10/9598494/5e61fb7a61f9/biomedicines-10-02432-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ca10/9598494/1101668f2606/biomedicines-10-02432-g004.jpg

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本文引用的文献

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Nat Cell Biol. 2022 Aug;24(8):1306-1318. doi: 10.1038/s41556-022-00961-5. Epub 2022 Jul 21.
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Comprehensive Analysis of RNA-Seq in Endometriosis Reveals Competing Endogenous RNA Network Composed of circRNA, lncRNA and mRNA.子宫内膜异位症中RNA测序的综合分析揭示了由环状RNA、长链非编码RNA和信使RNA组成的竞争性内源性RNA网络。
Front Genet. 2022 Mar 22;13:828238. doi: 10.3389/fgene.2022.828238. eCollection 2022.
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Single-cell transcriptomic analysis of endometriosis provides insights into fibroblast fates and immune cell heterogeneity.
子宫内膜异位症的单细胞转录组分析为成纤维细胞命运和免疫细胞异质性提供了见解。
Cell Biosci. 2021 Jul 7;11(1):125. doi: 10.1186/s13578-021-00637-x.
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