• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

基因共表达网络模块分析揭示了HIV相关神经认知障碍中免疫机制的改变。

Gene Co-Expression Network Modular Analysis Reveals Altered Immune Mechanisms in HIV-HAND.

作者信息

Petralia Maria Cristina, Nicoletti Ferdinando, Tancheva Lyubka, Kalfin Reni, Fagone Paolo, Mangano Katia

机构信息

Department of Clinical and Experimental Medicine, University of Messina, 98122 Messina, Italy.

Department of Biomedical and Biotechnological Sciences, University of Catania, Via S. Sofia 89, 95123 Catania, Italy.

出版信息

Brain Sci. 2022 Oct 12;12(10):1378. doi: 10.3390/brainsci12101378.

DOI:10.3390/brainsci12101378
PMID:36291312
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9599201/
Abstract

Although the introduction of HAART has completely changed the natural course of HIV infection, the number of chronic forms of HIV-associated neurocognitive disorder (HAND) has risen. It is estimated that up to half of subjects undergoing HAART therapy exhibit mild cognitive impairments. In the current study, we apply the gene co-expression network modular analysis, a well-established system biology approach, to the gene expression profiles of cases from the National NeuroAIDS Tissue Consortium (NNTC). We observed a negative enrichment for genes associated with the control of immune responses and putatively regulated by the transcription factors IRF8 and SPI1 and by both type I and II interferons. Our study provides evidence of altered immune responses, which are likely associated with the occurrence of HAND in the absence of HIV encephalitis (HIVE).

摘要

尽管高效抗逆转录病毒疗法(HAART)的引入彻底改变了HIV感染的自然病程,但与HIV相关的慢性神经认知障碍(HAND)的病例数量却有所增加。据估计,接受HAART治疗的患者中,多达一半表现出轻度认知障碍。在本研究中,我们将基因共表达网络模块分析(一种成熟的系统生物学方法)应用于国家神经艾滋病组织联盟(NNTC)病例的基因表达谱。我们观察到与免疫反应控制相关的基因呈负富集,这些基因可能受转录因子IRF8和SPI1以及I型和II型干扰素的调控。我们的研究提供了免疫反应改变的证据,这可能与无HIV脑炎(HIVE)情况下HAND的发生有关。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8439/9599201/594d0c76d415/brainsci-12-01378-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8439/9599201/b0a293bfa98f/brainsci-12-01378-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8439/9599201/774d1bc91f83/brainsci-12-01378-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8439/9599201/9ab1654ec274/brainsci-12-01378-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8439/9599201/6aeec68e646e/brainsci-12-01378-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8439/9599201/4bdd3efe3f32/brainsci-12-01378-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8439/9599201/8b01d49db89e/brainsci-12-01378-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8439/9599201/594d0c76d415/brainsci-12-01378-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8439/9599201/b0a293bfa98f/brainsci-12-01378-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8439/9599201/774d1bc91f83/brainsci-12-01378-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8439/9599201/9ab1654ec274/brainsci-12-01378-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8439/9599201/6aeec68e646e/brainsci-12-01378-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8439/9599201/4bdd3efe3f32/brainsci-12-01378-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8439/9599201/8b01d49db89e/brainsci-12-01378-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8439/9599201/594d0c76d415/brainsci-12-01378-g007.jpg

相似文献

1
Gene Co-Expression Network Modular Analysis Reveals Altered Immune Mechanisms in HIV-HAND.基因共表达网络模块分析揭示了HIV相关神经认知障碍中免疫机制的改变。
Brain Sci. 2022 Oct 12;12(10):1378. doi: 10.3390/brainsci12101378.
2
The National NeuroAIDS Tissue Consortium brain gene array: two types of HIV-associated neurocognitive impairment.国家神经艾滋病组织大脑基因阵列研究:两种类型的与 HIV 相关的神经认知障碍。
PLoS One. 2012;7(9):e46178. doi: 10.1371/journal.pone.0046178. Epub 2012 Sep 26.
3
Neuro-immune deconvolution analysis of OAS3 as a transcriptomic central node in HIV-associated neurocognitive disorders.作为HIV相关神经认知障碍中转录组学核心节点的OAS3的神经免疫反卷积分析
J Neurol Sci. 2023 Mar 15;446:120562. doi: 10.1016/j.jns.2023.120562. Epub 2023 Jan 20.
4
Gene expression patterns associated with neurological disease in human HIV infection.人类HIV感染中与神经疾病相关的基因表达模式。
PLoS One. 2017 Apr 26;12(4):e0175316. doi: 10.1371/journal.pone.0175316. eCollection 2017.
5
Systems analysis of human brain gene expression: mechanisms for HIV-associated neurocognitive impairment and common pathways with Alzheimer's disease.人类大脑基因表达的系统分析:与 HIV 相关的神经认知障碍的机制及与阿尔茨海默病的共同途径。
BMC Med Genomics. 2013 Feb 13;6:4. doi: 10.1186/1755-8794-6-4.
6
Neurovirological correlation with HIV-associated neurocognitive disorders and encephalitis in a HAART-era cohort.抗逆转录病毒治疗时代队列中与 HIV 相关的神经认知障碍和脑炎的神经病毒学相关性。
J Acquir Immune Defic Syndr. 2013 Apr 15;62(5):487-95. doi: 10.1097/QAI.0b013e31827f1bdb.
7
OAS Gene Family Expression Is Associated with HIV-Related Neurocognitive Disorders.OAS 基因家族的表达与 HIV 相关的神经认知障碍有关。
Mol Neurobiol. 2018 Mar;55(3):1905-1914. doi: 10.1007/s12035-017-0460-3. Epub 2017 Feb 24.
8
Risk Factors and Pathogenesis of HIV-Associated Neurocognitive Disorder: The Role of Host Genetics.HIV 相关神经认知障碍的风险因素和发病机制:宿主遗传学的作用。
Int J Mol Sci. 2018 Nov 14;19(11):3594. doi: 10.3390/ijms19113594.
9
CCL3L1 gene copy number in individuals with and without HIV-associated neurocognitive disorder.患有和未患有与HIV相关的神经认知障碍的个体的CCL3L1基因拷贝数。
Curr Biomark Find. 2012 Jan 1;2012(2):1-6. doi: 10.2147/CBF.S27685.
10
HIV-associated neurological disorders: a guide to pharmacotherapy.HIV 相关神经障碍:药物治疗指南。
CNS Drugs. 2012 Feb 1;26(2):123-34. doi: 10.2165/11597770-000000000-00000.

引用本文的文献

1
RNA-Seq analysis reveals the long noncoding RNAs associated with immunity in wild Myotis myotis bats.RNA测序分析揭示了与野生鼠耳蝠免疫相关的长链非编码RNA。
BMC Genomics. 2025 Apr 5;26(1):345. doi: 10.1186/s12864-025-11485-1.
2
ATF4 Signaling in HIV-1 Infection: Viral Subversion of a Stress Response Transcription Factor.ATF4信号通路在HIV-1感染中的作用:应激反应转录因子的病毒颠覆
Biology (Basel). 2024 Feb 26;13(3):146. doi: 10.3390/biology13030146.
3
Navigating the Gene Co-Expression Network and Drug Repurposing Opportunities for Brain Disorders Associated with Neurocognitive Impairment.

本文引用的文献

1
Recent advances in drug delivery and targeting to the brain.近年来,药物递送至脑部和脑部靶向的技术取得了进展。
J Control Release. 2022 Oct;350:668-687. doi: 10.1016/j.jconrel.2022.08.051. Epub 2022 Sep 7.
2
The Myeloid-Specific Transcription Factor PU.1 Upregulates Mannose Receptor Expression but Represses Basal Activity of the HIV-LTR Promoter.髓系特异性转录因子 PU.1 上调甘露糖受体表达,但抑制 HIV-LTR 启动子的基础活性。
J Virol. 2022 Jul 27;96(14):e0065222. doi: 10.1128/jvi.00652-22. Epub 2022 Jun 29.
3
Brain Cell Type Specific Gene Expression and Co-expression Network Architectures.
探索与神经认知障碍相关的脑部疾病的基因共表达网络及药物重新利用机会。
Brain Sci. 2023 Nov 7;13(11):1564. doi: 10.3390/brainsci13111564.
脑内细胞类型特异性基因表达与共表达网络架构。
Sci Rep. 2018 Jun 11;8(1):8868. doi: 10.1038/s41598-018-27293-5.
4
CEMiTool: a Bioconductor package for performing comprehensive modular co-expression analyses.CEMiTool:一个用于执行全面模块化共表达分析的 Bioconductor 软件包。
BMC Bioinformatics. 2018 Feb 20;19(1):56. doi: 10.1186/s12859-018-2053-1.
5
WebGestalt 2017: a more comprehensive, powerful, flexible and interactive gene set enrichment analysis toolkit.WebGestalt 2017:一个更全面、强大、灵活和互动的基因集富集分析工具包。
Nucleic Acids Res. 2017 Jul 3;45(W1):W130-W137. doi: 10.1093/nar/gkx356.
6
Gene expression patterns associated with neurological disease in human HIV infection.人类HIV感染中与神经疾病相关的基因表达模式。
PLoS One. 2017 Apr 26;12(4):e0175316. doi: 10.1371/journal.pone.0175316. eCollection 2017.
7
KEGG: new perspectives on genomes, pathways, diseases and drugs.京都基因与基因组百科全书(KEGG):关于基因组、通路、疾病和药物的新视角。
Nucleic Acids Res. 2017 Jan 4;45(D1):D353-D361. doi: 10.1093/nar/gkw1092. Epub 2016 Nov 28.
8
Comparative DNA Methylation Profiling Reveals an Immunoepigenetic Signature of HIV-related Cognitive Impairment.比较 DNA 甲基化分析揭示了与 HIV 相关认知障碍的免疫表观遗传特征。
Sci Rep. 2016 Sep 15;6:33310. doi: 10.1038/srep33310.
9
Fibroblast growth factors 1 and 2 in cerebrospinal fluid are associated with HIV disease, methamphetamine use, and neurocognitive functioning.脑脊液中的成纤维细胞生长因子1和2与HIV疾病、甲基苯丙胺使用及神经认知功能有关。
HIV AIDS (Auckl). 2016 Apr 29;8:93-9. doi: 10.2147/HIV.S93306. eCollection 2016.
10
Enrichr: a comprehensive gene set enrichment analysis web server 2016 update.Enrichr:一个全面的基因集富集分析网络服务器2016年更新版。
Nucleic Acids Res. 2016 Jul 8;44(W1):W90-7. doi: 10.1093/nar/gkw377. Epub 2016 May 3.