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全基因组范围内调查和鉴定 SWEET 基因家族,重点研究它们在玉米激素和非生物胁迫响应过程中的进化和表达。

Genome-Wide Investigation and Characterization of SWEET Gene Family with Focus on Their Evolution and Expression during Hormone and Abiotic Stress Response in Maize.

机构信息

College of Bioscience and Biotechnology, Shenyang Agricultural University, Shenyang 110866, China.

Shenyang Key Laboratory of Maize Genomic Selection Breeding, Shenyang Agricultural University, Shenyang 110866, China.

出版信息

Genes (Basel). 2022 Sep 20;13(10):1682. doi: 10.3390/genes13101682.

Abstract

The sugar will eventually be exported transporters (SWEET) family is an important group of transport carriers for carbon partitioning in plants and has important functions in growth, development, and abiotic stress tolerance. Although the SWEET family is an important sugar transporter, little is known of the functions of the SWEET family in maize (), especially in response to abiotic stresses. To further explore the response pattern of maize SWEET to abiotic stress, a bioinformatics-based approach was used to predict and identify the maize gene () family. Twenty-four genes were identified using the MaizeGDB database. Phylogenetic analysis resolved these twenty-four genes into four clades. One tandem and five segmental duplication events were identified, which played a major role in family expansion. Synteny analysis provided insight into the evolutionary characteristics of the genes with those of three graminaceous crop species. A heatmap showed that most genes responded to at least one type of abiotic stress. By an abscisic acid signaling pathway, among which five genes were significantly induced under NaCl treatment, eight were obviously up-regulated under PEG treatment and five were up-regulated under Cd stress, revealing their potential functions in response to abiotic stress. These findings will help to explain the evolutionary links of the family and contribute to future studies on the functional characteristics of genes, and then improve abiotic stress tolerance in maize through molecular breeding.

摘要

糖最终会被输出转运蛋白(SWEET)家族是植物中碳分配的重要运输载体群,在生长、发育和非生物胁迫耐受中具有重要功能。尽管 SWEET 家族是一种重要的糖转运蛋白,但人们对玉米()中 SWEET 家族的功能知之甚少,特别是在应对非生物胁迫方面。为了进一步探讨玉米 SWEET 对非生物胁迫的响应模式,采用基于生物信息学的方法预测和鉴定玉米 SWEET 基因()家族。使用 MaizeGDB 数据库鉴定了 24 个基因。系统发育分析将这 24 个基因分为四个分支。鉴定到一个串联和五个片段复制事件,这些事件在 家族的扩张中起主要作用。共线性分析深入了解了与三种禾本科作物的 基因的进化特征。热图显示,大多数 基因至少对一种非生物胁迫有反应。通过脱落酸信号通路,其中 5 个基因在 NaCl 处理下显著诱导,8 个基因在 PEG 处理下明显上调,5 个基因在 Cd 胁迫下上调,表明它们在应对非生物胁迫中的潜在功能。这些发现将有助于解释 家族的进化联系,并有助于未来对 基因功能特征的研究,然后通过分子育种提高玉米的非生物胁迫耐受性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3288/9601529/7d8559afdc77/genes-13-01682-g001.jpg

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