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一种新型鉴定的与细胞坏死性凋亡相关的风险特征,用于预测急性髓系白血病患者的预后和免疫浸润指征。

A Novel Identified Necroptosis-Related Risk Signature for Prognosis Prediction and Immune Infiltration Indication in Acute Myeloid Leukemia Patients.

机构信息

National Research Center for Translational Medicine at Shanghai, Ruijin Hospital, State Key Laboratory of Medical Genomics, Shanghai Institute of Hematology, Shanghai Jiao Tong University School of Medicine, Shanghai 200025, China.

Fujian Provincial Key Laboratory on Hematology, Fujian Medical University, Fuzhou 350122, China.

出版信息

Genes (Basel). 2022 Oct 11;13(10):1837. doi: 10.3390/genes13101837.

Abstract

AML ranks second in the most common types of leukemia diagnosed in both adults and children. Necroptosis is a programmed inflammatory cell death form reported to be an innate immune effector against microbial and viral pathogens and recently has been found to play an eventful role in the oncogenesis, progression, and metastasis of cancer. This study is designed to explore the potential value of necroptosis in predicting prognostic and optimizing the current therapeutic strategies for AML patients. We collected transcriptome and clinical data from the Cancer Genome Atlas (TCGA) and the Genotype-Tissue Expression (GTEx) databases and selected necroptosis-related genes with both differential significance and prognostic value. Six genes (, , , , , and ) were incorporated to generate a risk model with the implementation of multivariate Cox regression. The signature was proven to be an independent prognostic predictor in both training and validation cohorts with hazard ratios (HRs) of 1.51 (95% CI: 1.33-1.72) and 1.57 (95% CI: 1.16-2.12), respectively. Moreover, receiver operating characteristic (ROC) curve was utilized to quantify the predictive performance of the signature and satisfying results were shown with the area under the curve (AUC) up to 0.801 (3-year) and 0.619 (3-year), respectively. In addition, the subtyping of AML patients based on the risk signature demonstrated a significant correlation with the immune cell infiltration and response to immunotherapy. Finally, we incorporated risk signature with the classical clinical features to establish a nomogram which may contribute to the improvement of clinical management. To conclude, this study identified a necroptosis-related signature as a novel biomarker to improve the risk stratification, to inform the immunotherapy efficacy, and to indicate the therapeutic option of targeted therapy.

摘要

AML 在成人和儿童中诊断出的最常见类型的白血病中排名第二。坏死性凋亡是一种程序性炎症细胞死亡形式,据报道是针对微生物和病毒病原体的固有免疫效应因子,最近发现它在癌症的发生、发展和转移中发挥着重要作用。本研究旨在探讨坏死性凋亡在预测 AML 患者预后和优化当前治疗策略中的潜在价值。我们从癌症基因组图谱 (TCGA) 和基因型组织表达 (GTEx) 数据库中收集了转录组和临床数据,并选择了具有差异意义和预后价值的坏死性凋亡相关基因。使用多元 Cox 回归实现了将六个基因(、、、、、和)纳入其中的风险模型。该特征在训练和验证队列中均被证明是独立的预后预测因子,风险比 (HR) 分别为 1.51(95%CI:1.33-1.72)和 1.57(95%CI:1.16-2.12)。此外,我们还使用接收者操作特征 (ROC) 曲线来量化该特征的预测性能,结果显示曲线下面积 (AUC) 高达 0.801(3 年)和 0.619(3 年)。此外,基于风险特征对 AML 患者进行的亚组分析与免疫细胞浸润和免疫治疗反应之间存在显著相关性。最后,我们将风险特征与经典临床特征相结合,建立了一个列线图,可能有助于改善临床管理。总之,本研究确定了一个与坏死性凋亡相关的特征作为一种新的生物标志物,以改善风险分层,为免疫治疗疗效提供信息,并为靶向治疗的治疗选择提供指示。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/74d2/9602382/327ae6d194ea/genes-13-01837-g001.jpg

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