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[甜菜(Beta vulgaris)基因家族的全基因组鉴定及其在盐处理下的表达分析]

[Genome-wide identification of gene family in sugar beet () and their expression analysis under salt treatments].

作者信息

Yang Xiaohan, Wu Guoqiang, Wei Ming, Wang Beichen

机构信息

School of Life Science and Engineering, Lanzhou University of Technology, Lanzhou 730050, Gansu, China.

出版信息

Sheng Wu Gong Cheng Xue Bao. 2022 Oct 25;38(10):3773-3789. doi: 10.13345/j.cjb.220257.

Abstract

High-affinity K transporter (HAK) is one of the most important K transporter families in plants and plays an important role in plant K uptake and transport. To explore the biological functions and gene expression patterns of the gene family members in sugar beet (), physicochemical properties, the gene structure, chromosomal location, phylogenetic evolution, conserved motifs, three-dimensional structure, interaction network, -acting elements of promoter of were predicted by bioinformatic analysis, and their expression levels in different tissues of sugar beet under salt stress were analyzed by qRT-PCR. A total of 10 genes were identified in the sugar beet genome. They contained 8-10 exons and 7-9 introns. The average number of amino acids was 778.30, the average molecular weight was 88.31 kDa, and the isoelectric point was 5.38-9.41. The BvHAK proteins contained 11-14 transmembrane regions. , , and were localized on plasma membrane, while others were localized on tonoplast. Phylogenetic analysis showed that in higher plants can be divided into five clusters, namely cluster Ⅰ, Ⅱ, Ⅲ, Ⅳ, and Ⅴ, among which the members of cluster Ⅱ can be divided into three subclusters, including Ⅱa, Ⅱb, and Ⅱc. The gene family members were distributed in cluster Ⅰ-Ⅳ with 1, 6, 1, and 2 members, respectively. The promoter of gene family mainly contained stress responsive elements, hormone responsive elements, and growth and development responsive elements. The expression pattern of the genes were further analyzed in different tissues of sugar beet upon salt treatment, and found that 50 and 100 mmol/L NaCl significantly induced the expression of the genes in both shoots and roots. High salt (150 mmol/L) treatment clearly down-regulated their expression levels in shoots, but not in roots. These results suggested that the gene family plays important roles in the response of sugar beet to salt stress.

摘要

高亲和性钾转运体(HAK)是植物中最重要的钾转运体家族之一,在植物钾吸收和运输中发挥重要作用。为探究甜菜中该基因家族成员的生物学功能和基因表达模式,通过生物信息学分析预测了其理化性质、基因结构、染色体定位、系统发育进化、保守基序、三维结构、互作网络及启动子顺式作用元件,并采用qRT-PCR分析了盐胁迫下甜菜不同组织中它们的表达水平。在甜菜基因组中共鉴定出10个BvHAK基因。它们含有8 - 10个外显子和7 - 9个内含子。氨基酸平均数量为778.30,平均分子量为88.31 kDa,等电点为5.38 - 9.41。BvHAK蛋白含有11 - 14个跨膜区。BvHAK1、BvHAK2、BvHAK3和BvHAK4定位于质膜,而其他的定位于液泡膜。系统发育分析表明,高等植物中的HAK可分为五个簇,即簇Ⅰ、Ⅱ、Ⅲ、Ⅳ和Ⅴ,其中簇Ⅱ的成员可分为三个亚簇,包括Ⅱa、Ⅱb和Ⅱc。BvHAK基因家族成员分布在簇Ⅰ - Ⅳ中,分别有1、6、1和2个成员。BvHAK基因家族的启动子主要包含胁迫响应元件、激素响应元件以及生长发育响应元件。进一步分析了盐处理后甜菜不同组织中BvHAK基因的表达模式,发现50和100 mmol/L NaCl显著诱导茎和根中BvHAK基因的表达。高盐(150 mmol/L)处理明显下调了它们在茎中的表达水平,但在根中未下调。这些结果表明,BvHAK基因家族在甜菜对盐胁迫的响应中发挥重要作用。

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