Engineering Research Center of Agricultural Microbiology Technology, Ministry of Education, Heilongjiang University, Harbin 150080, China.
Heilongjiang Provincial Key Laboratory of Ecological Restoration and Resource Utilization for Cold Region, School of Life Sciences, Heilongjiang University, Harbin 150080, China.
Int J Mol Sci. 2024 Jun 28;25(13):7132. doi: 10.3390/ijms25137132.
GAI-RGA-and-SCR (GRAS) transcription factors can regulate many biological processes such as plant growth and development and stress defense, but there are few related studies in sugar beet. Salt stress can seriously affect the yield and quality of sugar beet (). Therefore, this study used bioinformatics methods to identify GRAS transcription factors in sugar beet and analyzed their structural characteristics, evolutionary relationships, regulatory networks and salt stress response patterns. A total of 28 genes were identified in the whole genome of sugar beet, and the sequence composition was relatively conservative. According to the topology of the phylogenetic tree, BvGRAS can be divided into nine subfamilies: LISCL, SHR, PAT1, SCR, SCL3, LAS, SCL4/7, HAM and DELLA. Synteny analysis showed that there were two pairs of fragment replication genes in the gene, indicating that gene replication was not the main source of BvGRAS family members. Regulatory network analysis showed that BvGRAS could participate in the regulation of protein interaction, material transport, redox balance, ion homeostasis, osmotic substance accumulation and plant morphological structure to affect the tolerance of sugar beet to salt stress. Under salt stress, and its target genes showed an up-regulated expression trend. Among them, , , , , and may be the key genes for sugar beet's salt stress response. In this study, the structural characteristics and biological functions of BvGRAS transcription factors were analyzed, which provided data for the further study of the molecular mechanisms of salt stress and molecular breeding of sugar beet.
GAI-RGA 和 SCR(GRAS)转录因子可以调节植物生长发育和应激防御等许多生物过程,但在甜菜中相关研究较少。盐胁迫会严重影响甜菜的产量和品质。因此,本研究采用生物信息学方法鉴定了甜菜中的 GRAS 转录因子,并分析了它们的结构特征、进化关系、调控网络和盐胁迫响应模式。在甜菜全基因组中鉴定出 28 个基因,序列组成相对保守。根据系统发育树的拓扑结构,BvGRAS 可以分为 9 个亚家族:LISCL、SHR、PAT1、SCR、SCL3、LAS、SCL4/7、HAM 和 DELLA。共线性分析表明,基因中有两对片段复制基因,表明基因复制不是 BvGRAS 家族成员的主要来源。调控网络分析表明,BvGRAS 可以参与蛋白质相互作用、物质运输、氧化还原平衡、离子稳态、渗透物质积累和植物形态结构的调节,从而影响甜菜对盐胁迫的耐受性。在盐胁迫下,和其靶基因表现出上调表达的趋势。其中,、、、、、可能是甜菜盐胁迫响应的关键基因。本研究分析了 BvGRAS 转录因子的结构特征和生物学功能,为进一步研究盐胁迫的分子机制和甜菜的分子育种提供了数据。