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生物金属位点的 X 射线荧光全息术:应用于肌红蛋白。

X-ray fluorescence holography of biological metal sites: Application to myoglobin.

机构信息

Division of Biophysics, Department of Physiology, Jichi Medical University, Yakushiji, Shimotsuke, Tochigi, 329-0498, Japan.

Department of Physical Science and Engineering, Nagoya Institute of Technology, Gokiso, Showa, Nagoya, 466-8555, Japan.

出版信息

Biochem Biophys Res Commun. 2022 Dec 20;635:277-282. doi: 10.1016/j.bbrc.2022.10.003. Epub 2022 Oct 13.

Abstract

X-ray fluorescence holography (XFH) is a relatively new technique capable of providing unique three-dimensional structural information around specific atoms that act as a light source in crystalline samples. So far, XFH has typically been applied to inorganic materials such as dopants in metals and semiconductors. Here, we investigate the possibility of using XFH to visualize the metal active site in sperm whale myoglobin (Mb), a monomeric oxygen storage heme protein. We demonstrate that the atomic images reconstructed from the hologram data of crystals of carbonmonoxy myoglobin (MbCO) are moderately consistent with the crystal structure, which is also determined in this study by X-ray crystallography in the near-atomic resolution, as well as simulation results. These results open up a new avenue for the application of XFH to local atomic and electronic structure imaging of metal-sites in biomolecules.

摘要

X 射线荧光全息术(XFH)是一种相对较新的技术,能够提供作为晶态样品光源的特定原子周围独特的三维结构信息。到目前为止,XFH 通常应用于无机材料,如金属和半导体中的掺杂剂。在这里,我们研究了使用 XFH 来可视化抹香鲸肌红蛋白(Mb)中金属活性位点的可能性,肌红蛋白是一种单体氧储存血红素蛋白。我们证明,从一氧化碳肌红蛋白(MbCO)晶体的全息图数据重建的原子图像与晶体结构相当一致,该晶体结构也是本研究通过近原子分辨率的 X 射线晶体学以及模拟结果确定的。这些结果为 XFH 在生物分子中金属位点的局部原子和电子结构成像中的应用开辟了新途径。

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