Berkhahn Sarah, Ehrhardt Matthias
Applied and Computational Mathematics, Bergische Universität Wuppertal, Wuppertal, Germany.
Adv Contin Discret Model. 2022;2022(1):61. doi: 10.1186/s13662-022-03733-5. Epub 2022 Oct 27.
In this paper, we replace the standard numerical approach of estimating parameters in a mathematical model using numerical solvers for differential equations with a physics-informed neural network (PINN). This neural network requires a sequence of time instances as direct input of the network and the numbers of susceptibles, vaccinated, infected, hospitalized, and recovered individuals per time instance to learn certain parameters of the underlying model, which are used for the loss calculations. The established model is an extended susceptible-infected-recovered (SIR) model in which the transitions between disease-related population groups, called compartments, and the physical laws of epidemic transmission dynamics are expressed by a system of ordinary differential equations (ODEs). The system of ODEs and its time derivative are included in the residual loss function of the PINN in addition to the data error between the current network output and the time series data of the compartment sizes. Further, we illustrate how this PINN approach can also be used for differential equation-based models such as the proposed extended SIR model, called SVIHR model. In a validation process, we compare the performance of the PINN with results obtained with the numerical technique of non-standard finite differences (NSFD) in generating future COVID-19 scenarios based on the parameters identified by the PINN. The used training data set covers the time between the outbreak of the pandemic in Germany and the last week of the year 2021. We obtain a two-step or hybrid approach, as the PINN is then used to generate a future COVID-19 outbreak scenario describing a possibly next pandemic wave. The week at which the prediction starts is chosen in mid-April 2022.
在本文中,我们用物理信息神经网络(PINN)取代了使用微分方程数值求解器来估计数学模型参数的标准数值方法。该神经网络需要一系列时间实例作为网络的直接输入,以及每个时间实例中易感者、接种者、感染者、住院者和康复者的数量,以便学习基础模型的某些参数,这些参数用于损失计算。所建立的模型是一个扩展的易感-感染-康复(SIR)模型,其中疾病相关人群组(称为 compartments)之间的转变以及疫情传播动力学的物理规律由常微分方程(ODE)系统表示。除了当前网络输出与 compartments 规模的时间序列数据之间的数据误差外,ODE 系统及其时间导数还包含在 PINN 的残差损失函数中。此外,我们说明了这种 PINN 方法如何也可用于基于微分方程的模型,如所提出扩展的 SIR 模型(称为 SVIHR 模型)。在验证过程中,我们将 PINN 的性能与使用非标准有限差分(NSFD)数值技术基于 PINN 识别的参数生成未来 COVID-19 情景所获得的结果进行比较。所使用的训练数据集涵盖了德国疫情爆发至 2021 年最后一周的时间。我们获得了一种两步或混合方法,因为随后使用 PINN 来生成描述可能的下一波疫情的未来 COVID-19 爆发情景。预测开始的周数选择在 2022 年 4 月中旬。